Project name: deneme

Status: done

submitted: 2023-06-02 21:38:52, status changed: 2023-06-03 00:12:05

Project settings
Peptide sequence QAPGKE
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 55.0234 2.78063 9.83989 153
cluster_2.pdb ( medoid) 48.0896 4.69956 14.1957 226
cluster_3.pdb ( medoid) 36.2867 2.89362 14.4923 105
cluster_4.pdb ( medoid) 36.0621 2.19067 6.07764 79
cluster_5.pdb ( medoid) 20.0369 4.24218 17.9389 85
cluster_6.pdb ( medoid) 14.9132 7.5772 27.0883 113
cluster_7.pdb ( medoid) 13.289 5.86952 19.7631 78
cluster_8.pdb ( medoid) 8.8401 7.46598 25.2984 66
cluster_9.pdb ( medoid) 4.70052 7.23325 29.6819 34
cluster_10.pdb ( medoid) 4.5989 13.264 27.274 61