Project name: 2b9h bound default 3 runA RRNLKGLNLNLH ss: CCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:19:11, status changed: 2015-03-13 11:31:24

Project settings
Peptide sequence RRNLKGLNLNLH
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_3 View
model_4 View
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model_6 View
model_7 View
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model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 45.2241 4.68776 39.2615 212
cluster_2.pdb ( medoid) 17.3842 5.75235 21.172 100
cluster_3.pdb ( medoid) 15.2732 10.6723 36.2923 163
cluster_4.pdb ( medoid) 12.6256 14.336 53.9231 181
cluster_5.pdb ( medoid) 12.1941 3.60829 8.02103 44
cluster_6.pdb ( medoid) 11.5553 4.41356 10.498 51
cluster_7.pdb ( medoid) 9.50503 7.25931 18.5069 69
cluster_8.pdb ( medoid) 8.56534 7.23848 30.4938 62
cluster_9.pdb ( medoid) 5.6858 8.09033 36.6076 46
cluster_10.pdb ( medoid) 3.27003 22.0181 55.6173 72
Laboratory of Theory of Biopolymers 2015