Project name: f9899e2c48ebdd0

Status: done

submitted: 2017-12-06 06:07:10, status changed: 2017-12-06 09:05:50

Project settings
Protein sequence(s) APVSIWSRVVQFGTGWGFWVSGHVFITAKHVAPPKGTEIFGRKPGDFTVTSSGDFLKYYFTSAVRPDIPAMVLENGCQEGVVASVLVKRASGEMLALAVRMGSQAAIKIGSAVVHGQTGMLLTGSNAKAQDLGTIPGDCGCPYVYKKGNTWVVIGVHVAATRSGNTVIAATHGEPTLEALEFQ input pdb
Peptide sequence QTEKNPL
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 37.3678 5.00431 26.788 187
cluster_2.pdb ( medoid) 36.9544 4.54615 17.514 168
cluster_3.pdb ( medoid) 24.9993 2.08006 4.56389 52
cluster_4.pdb ( medoid) 21.8575 8.18942 32.3867 179
cluster_5.pdb ( medoid) 17.7875 2.81096 20.3692 50
cluster_6.pdb ( medoid) 13.3597 6.06302 15.6114 81
cluster_7.pdb ( medoid) 12.8876 8.76809 27.9289 113
cluster_8.pdb ( medoid) 8.25712 8.47754 23.655 70
cluster_9.pdb ( medoid) 7.64338 9.28908 32.9916 71
cluster_10.pdb ( medoid) 1.69459 17.1133 39.659 29

 
Laboratory of Theory of Biopolymers 2015