Project name: 2J6K unbound default A PPKPRPRR ss: CCCCCCCC

Status: done

submitted: 2015-02-20 17:44:48, status changed: 2015-03-13 11:31:38

Project settings
Protein sequence(s) VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIK input pdb
Peptide sequence PPKPRPRR
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 60.5249 2.29657 6.11743 139
cluster_2.pdb ( medoid) 29.6834 5.12071 26.8366 152
cluster_3.pdb ( medoid) 25.6471 4.60091 11.781 118
cluster_4.pdb ( medoid) 23.4839 6.55769 18.8186 154
cluster_5.pdb ( medoid) 21.5698 5.007 13.8102 108
cluster_6.pdb ( medoid) 18.7329 4.27055 21.4947 80
cluster_7.pdb ( medoid) 18.3278 3.6011 11.3674 66
cluster_8.pdb ( medoid) 15.6532 8.49668 29.2369 133
cluster_9.pdb ( medoid) 2.93774 7.48874 22.7753 22
cluster_10.pdb ( medoid) 2.1935 12.765 23.9559 28
Laboratory of Theory of Biopolymers 2015