Project name: fd33c06ae34382b

Status: done

submitted: 2018-01-10 13:49:49, status changed: 2018-01-10 15:10:21

Project settings
Peptide sequence VYYI
Simulation mc cycles50
Peptide secondary structure psipred CCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 37.0321 3.99653 24.0568 148
cluster_2.pdb ( medoid) 30.5517 5.95712 21.9106 182
cluster_3.pdb ( medoid) 23.2578 5.8905 15.4853 137
cluster_4.pdb ( medoid) 14.6319 5.74089 19.4882 84
cluster_5.pdb ( medoid) 13.5113 6.88312 18.0565 93
cluster_6.pdb ( medoid) 10.6073 7.73055 23.7337 82
cluster_7.pdb ( medoid) 9.33293 7.50033 19.6928 70
cluster_8.pdb ( medoid) 7.9262 8.83147 26.324 70
cluster_9.pdb ( medoid) 7.61416 7.88006 26.7445 60
cluster_10.pdb ( medoid) 7.61167 6.96299 23.3662 53

Laboratory of Theory of Biopolymers 2015