Project name: LQI_PU2

Status: done

submitted: 2017-12-04 16:22:47, status changed: 2017-12-04 18:25:59

Project settings
Protein sequence(s) CRHCLSTGSCVSASELVCPAGSTHCYSGVLSLRGGGVISDLKVQGCISQSQPGCNLLNGTQTIGPVDVREDC input pdb
Peptide sequence LQIQSWSSSP
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 42.4945 4.02405 11.0859 171
cluster_2.pdb ( medoid) 38.9047 4.16402 21.502 162
cluster_3.pdb ( medoid) 26.4684 4.64705 13.4635 123
cluster_4.pdb ( medoid) 20.5775 4.3737 13.2466 90
cluster_5.pdb ( medoid) 14.6968 7.00831 27.33 103
cluster_6.pdb ( medoid) 14.1488 5.6542 21.8911 80
cluster_7.pdb ( medoid) 14.0567 5.69124 15.2992 80
cluster_8.pdb ( medoid) 12.0453 7.22276 23.1545 87
cluster_9.pdb ( medoid) 5.32146 9.95967 23.6713 53
cluster_10.pdb ( medoid) 4.20643 12.1243 28.7023 51

 
Laboratory of Theory of Biopolymers 2015