Project name: fd959dc1aaebe38

Status: done

submitted: 2018-10-11 16:39:43, status changed: 2018-10-12 01:20:15

Project settings
Peptide sequence LTNLTPELKA
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 54.7134 2.97916 11.2376 163
cluster_2.pdb ( medoid) 47.7794 2.21853 16.1987 106
cluster_3.pdb ( medoid) 23.7333 6.53091 33.3504 155
cluster_4.pdb ( medoid) 21.7887 3.07499 22.906 67
cluster_5.pdb ( medoid) 18.1152 7.28671 43.4768 132
cluster_6.pdb ( medoid) 10.6184 8.6642 27.8895 92
cluster_7.pdb ( medoid) 10.4668 10.7005 35.662 112
cluster_8.pdb ( medoid) 6.00624 14.6514 52.3511 88
cluster_9.pdb ( medoid) 5.1534 10.0904 27.6363 52
cluster_10.pdb ( medoid) 2.80656 11.7582 45.895 33

Laboratory of Theory of Biopolymers 2015