Project name: 2o4j bound default A KNHPMLMNLLKD ss: CCCHHHHHHHCC

Status: done

submitted: 2015-02-19 18:28:29, status changed: 2015-03-13 11:31:54

Project settings
Peptide sequence KNHPMLMNLLKD
Simulation mc cycles50
Peptide secondary structure CCCHHHHHHHCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 46.3754 3.0404 12.3612 141
cluster_2.pdb ( medoid) 45.2245 5.37319 31.845 243
cluster_3.pdb ( medoid) 20.1005 6.41774 14.6477 129
cluster_4.pdb ( medoid) 15.8648 4.34925 9.1687 69
cluster_5.pdb ( medoid) 15.0866 4.37473 22.9669 66
cluster_6.pdb ( medoid) 13.952 4.94553 16.784 69
cluster_7.pdb ( medoid) 9.44217 11.9676 35.6161 113
cluster_8.pdb ( medoid) 7.36367 12.0864 31.5099 89
cluster_9.pdb ( medoid) 6.6965 7.01859 13.8264 47
cluster_10.pdb ( medoid) 5.59194 6.08018 13.844 34
Laboratory of Theory of Biopolymers 2015