Project name: 1N7E unbound default 3 run A ATVRTYSC ss: CCCCCCCC

Status: done

submitted: 2015-02-25 18:47:32, status changed: 2015-03-13 11:31:57

Project settings
Protein sequence(s) GAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPASS input pdb
Peptide sequence ATVRTYSC
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 87.7866 2.93894 9.90889 258
cluster_2.pdb ( medoid) 57.1642 2.95639 12.9331 169
cluster_3.pdb ( medoid) 23.3874 3.84822 11.1217 90
cluster_4.pdb ( medoid) 11.2153 4.63651 16.531 52
cluster_5.pdb ( medoid) 10.5423 8.25245 32.2835 87
cluster_6.pdb ( medoid) 6.71874 9.07908 28.3835 61
cluster_7.pdb ( medoid) 6.10111 16.0627 42.0018 98
cluster_8.pdb ( medoid) 6.05404 7.59823 14.1999 46
cluster_9.pdb ( medoid) 5.95743 9.56789 19.1354 57
cluster_10.pdb ( medoid) 5.66962 14.463 34.3161 82
Laboratory of Theory of Biopolymers 2015