Project name: 2HPJ unbound default 2 run A DDLYG ss: CCCCC

Status: done

submitted: 2015-02-25 18:46:56, status changed: 2015-03-13 11:32:02

Project settings
Protein sequence(s) SASPAVAELCQNTPETFLEASKLLLTYADNILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAIERS input pdb
Peptide sequence DDLYG
Simulation mc cycles50
Peptide secondary structure CCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 69.1241 2.31468 16.1907 160
cluster_2.pdb ( medoid) 46.7294 5.07176 26.8043 237
cluster_3.pdb ( medoid) 44.8439 2.02926 9.23296 91
cluster_4.pdb ( medoid) 19.6646 4.93271 12.0672 97
cluster_5.pdb ( medoid) 18.5681 2.96207 6.6208 55
cluster_6.pdb ( medoid) 14.0234 4.99167 14.8735 70
cluster_7.pdb ( medoid) 12.8583 7.31044 20.639 94
cluster_8.pdb ( medoid) 5.52117 14.3086 35.0066 79
cluster_9.pdb ( medoid) 5.39298 11.4964 38.2615 62
cluster_10.pdb ( medoid) 2.98764 18.4092 37.7047 55
Laboratory of Theory of Biopolymers 2015