Download models Download Cα trajectory
Status: Done started: 2018-May-15 20:34:46 UTC
Project Name1a2p
SequenceVINTFDGVAD YLQTYHKLPD NYITKSEAQA LGWVASKGNL ADVAPGKSIG GDIFSNREGK LPGKSGRTWR EADINYTSGF RNSDRILYSS DWLIYKTTDH YQTFTKIR
Secondary structure

CCCCHHHHHH HHHHHCCCCC CEECHHHHHH HCCCCCCCCH HHHCCCCEEE EEEECCCCCC CCCCCCCCEE EEECCCCCCC CCCCEEEEEC CCCEEEECCC CCCCEECC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-May-16 01:07 UTC
Project Name1a2p
Cluster #123456789101112
Cluster density184.0148.1138.1121.0117.4116.7106.789.079.269.156.745.4
Cluster size2972312301921781901661401241147563
Average cluster RMSD1.61.61.71.61.51.61.61.61.61.61.31.4

Read about clustering method.

#123456789101112
RMSD 2.56 2.53 2.72 2.41 2.72 2.47 2.49 2.77 2.70 2.96 3.07 2.57
GDT_TS 0.67 0.67 0.65 0.70 0.66 0.67 0.69 0.65 0.66 0.66 0.62 0.70

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

#123456789101112
1 0.00 2.03 1.61 1.96 1.79 1.84 2.13 2.19 2.64 2.57 2.39 2.29
2 2.03 0.00 2.26 1.70 1.75 2.19 1.81 2.22 2.65 2.54 2.27 2.01
3 1.61 2.26 0.00 1.93 2.04 2.09 2.36 2.22 2.72 2.84 2.54 2.46
4 1.96 1.70 1.93 0.00 1.63 2.26 1.86 2.09 2.59 2.71 2.50 1.96
5 1.79 1.75 2.04 1.63 0.00 2.39 2.19 2.10 2.79 2.83 2.56 1.94
6 1.84 2.19 2.09 2.26 2.39 0.00 2.30 2.56 2.58 2.72 2.37 2.45
7 2.13 1.81 2.36 1.86 2.19 2.30 0.00 2.57 3.05 2.58 2.16 2.57
8 2.19 2.22 2.22 2.09 2.10 2.56 2.57 0.00 2.53 2.88 2.78 2.34
9 2.64 2.65 2.72 2.59 2.79 2.58 3.05 2.53 0.00 2.63 3.18 2.46
10 2.57 2.54 2.84 2.71 2.83 2.72 2.58 2.88 2.63 0.00 2.60 3.11
11 2.39 2.27 2.54 2.50 2.56 2.37 2.16 2.78 3.18 2.60 0.00 2.81
12 2.29 2.01 2.46 1.96 1.94 2.45 2.57 2.34 2.46 3.11 2.81 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

#123456789101112
1 1.00 0.78 0.84 0.78 0.80 0.80 0.73 0.73 0.70 0.68 0.73 0.74
2 0.78 1.00 0.74 0.80 0.78 0.75 0.77 0.72 0.70 0.71 0.73 0.76
3 0.84 0.74 1.00 0.75 0.78 0.74 0.70 0.72 0.70 0.69 0.73 0.72
4 0.78 0.80 0.75 1.00 0.81 0.75 0.77 0.76 0.69 0.71 0.70 0.77
5 0.80 0.78 0.78 0.81 1.00 0.71 0.71 0.76 0.69 0.69 0.69 0.76
6 0.80 0.75 0.74 0.75 0.71 1.00 0.74 0.69 0.73 0.69 0.75 0.71
7 0.73 0.77 0.70 0.77 0.71 0.74 1.00 0.69 0.69 0.69 0.77 0.69
8 0.73 0.72 0.72 0.76 0.76 0.69 0.69 1.00 0.71 0.71 0.67 0.73
9 0.70 0.70 0.70 0.69 0.69 0.73 0.69 0.71 1.00 0.75 0.69 0.74
10 0.68 0.71 0.69 0.71 0.69 0.69 0.69 0.71 0.75 1.00 0.69 0.70
11 0.73 0.73 0.73 0.70 0.69 0.75 0.77 0.67 0.69 0.69 1.00 0.67
12 0.74 0.76 0.72 0.77 0.76 0.71 0.69 0.73 0.74 0.70 0.67 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013