Project Name | Tetherin_No_substrate |
Project Name | Tetherin_No_substrate |
Cluster # | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
Cluster density | 165.9 | 156.0 | 124.5 | 122.6 | 118.9 | 105.7 | 87.2 | 73.3 | 65.1 | 56.2 | 49.5 | 25.5 |
Cluster size | 315 | 280 | 159 | 231 | 183 | 234 | 114 | 152 | 101 | 101 | 83 | 47 |
Average cluster RMSD | 1.9 | 1.8 | 1.3 | 1.9 | 1.5 | 2.2 | 1.3 | 2.1 | 1.6 | 1.8 | 1.7 | 1.8 |
# | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
RMSD | 4.00 | 4.01 | 6.19 | 3.57 | 6.95 | 4.43 | 5.69 | 4.20 | 5.73 | 7.09 | 5.85 | 6.47 |
GDT_TS | 0.65 | 0.66 | 0.57 | 0.68 | 0.53 | 0.62 | 0.57 | 0.68 | 0.59 | 0.54 | 0.61 | 0.52 |
The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.
# | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
1 | 0.00 | 0.69 | 5.07 | 1.44 | 5.43 | 2.09 | 2.66 | 2.47 | 2.87 | 6.01 | 4.53 | 4.84 |
2 | 0.69 | 0.00 | 5.15 | 1.63 | 5.49 | 2.14 | 2.50 | 2.62 | 2.82 | 6.05 | 4.57 | 4.86 |
3 | 5.07 | 5.15 | 0.00 | 5.55 | 1.60 | 5.57 | 6.05 | 4.87 | 5.59 | 2.44 | 3.43 | 1.60 |
4 | 1.44 | 1.63 | 5.55 | 0.00 | 5.95 | 2.09 | 3.53 | 2.35 | 3.42 | 6.30 | 4.83 | 5.42 |
5 | 5.43 | 5.49 | 1.60 | 5.95 | 0.00 | 5.91 | 6.16 | 5.41 | 5.63 | 1.95 | 3.36 | 1.39 |
6 | 2.09 | 2.14 | 5.57 | 2.09 | 5.91 | 0.00 | 3.38 | 1.60 | 2.82 | 6.03 | 5.19 | 5.39 |
7 | 2.66 | 2.50 | 6.05 | 3.53 | 6.16 | 3.38 | 0.00 | 4.10 | 1.97 | 6.98 | 5.63 | 5.53 |
8 | 2.47 | 2.62 | 4.87 | 2.35 | 5.41 | 1.60 | 4.10 | 0.00 | 3.47 | 5.34 | 4.74 | 4.93 |
9 | 2.87 | 2.82 | 5.59 | 3.42 | 5.63 | 2.82 | 1.97 | 3.47 | 0.00 | 6.18 | 5.23 | 5.12 |
10 | 6.01 | 6.05 | 2.44 | 6.30 | 1.95 | 6.03 | 6.98 | 5.34 | 6.18 | 0.00 | 3.63 | 2.77 |
11 | 4.53 | 4.57 | 3.43 | 4.83 | 3.36 | 5.19 | 5.63 | 4.74 | 5.23 | 3.63 | 0.00 | 3.59 |
12 | 4.84 | 4.86 | 1.60 | 5.42 | 1.39 | 5.39 | 5.53 | 4.93 | 5.12 | 2.77 | 3.59 | 0.00 |
The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.
# | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
1 | 1.00 | 0.98 | 0.58 | 0.89 | 0.63 | 0.90 | 0.76 | 0.89 | 0.71 | 0.63 | 0.71 | 0.60 |
2 | 0.98 | 1.00 | 0.57 | 0.87 | 0.59 | 0.88 | 0.75 | 0.86 | 0.70 | 0.60 | 0.73 | 0.57 |
3 | 0.58 | 0.57 | 1.00 | 0.56 | 0.84 | 0.57 | 0.54 | 0.65 | 0.54 | 0.74 | 0.70 | 0.82 |
4 | 0.89 | 0.87 | 0.56 | 1.00 | 0.59 | 0.83 | 0.70 | 0.85 | 0.68 | 0.64 | 0.71 | 0.57 |
5 | 0.63 | 0.59 | 0.84 | 0.59 | 1.00 | 0.59 | 0.57 | 0.69 | 0.57 | 0.88 | 0.72 | 0.87 |
6 | 0.90 | 0.88 | 0.57 | 0.83 | 0.59 | 1.00 | 0.76 | 0.85 | 0.71 | 0.63 | 0.68 | 0.58 |
7 | 0.76 | 0.75 | 0.54 | 0.70 | 0.57 | 0.76 | 1.00 | 0.72 | 0.86 | 0.59 | 0.59 | 0.55 |
8 | 0.89 | 0.86 | 0.65 | 0.85 | 0.69 | 0.85 | 0.72 | 1.00 | 0.69 | 0.70 | 0.71 | 0.69 |
9 | 0.71 | 0.70 | 0.54 | 0.68 | 0.57 | 0.71 | 0.86 | 0.69 | 1.00 | 0.59 | 0.59 | 0.57 |
10 | 0.63 | 0.60 | 0.74 | 0.64 | 0.88 | 0.63 | 0.59 | 0.70 | 0.59 | 1.00 | 0.73 | 0.78 |
11 | 0.71 | 0.73 | 0.70 | 0.71 | 0.72 | 0.68 | 0.59 | 0.71 | 0.59 | 0.73 | 1.00 | 0.69 |
12 | 0.60 | 0.57 | 0.82 | 0.57 | 0.87 | 0.58 | 0.55 | 0.69 | 0.57 | 0.78 | 0.69 | 1.00 |
The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.
© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013