Download models Download Cα trajectory
Status: Done started: 2018-May-15 11:52:44 UTC
Project NameVVD_lit
SequenceTLYAPGGYDI MGYLIQIMNR PNPQVELGPV DTSCALILCD LKQKDTPIVY ASEAFLYMTG YSNAEVLGRN CRFLQSPDGM VKPKSTRKYV DSNTINTMRK AIDRNAEVQV EVVNFKKNGQ RFVNFLTMIP VRDETGEYRY SMGFQCE
Secondary structure

CCCCCCCCCH HHHHHHHHCC CCCCCCCCCC CCCCEEEEEE CCCCCCCEEE ECHHHHHHHC CCHHHHCCCC CCCCCCCCCC CCCCCCCCCC CHHHHHHHHH HHHHCCCEEE EEEEECCCCC EEEEEEEEEE EECCCCCEEE EEEEECC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-May-15 16:31 UTC
Project NameVVD_lit
Cluster #123456789101112
Cluster density154.9142.6136.7133.1121.3113.8101.5100.992.064.659.554.1
Cluster size2352182172131951791551551511069284
Average cluster RMSD1.51.51.61.61.61.61.51.51.61.61.51.6

Read about clustering method.

#123456789101112
RMSD 3.20 3.14 3.40 3.32 3.37 3.43 3.06 3.54 3.43 3.33 3.04 3.35
GDT_TS 0.67 0.65 0.63 0.69 0.63 0.64 0.69 0.64 0.63 0.66 0.66 0.66

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

#123456789101112
1 0.00 1.90 2.98 2.03 2.01 1.82 1.94 1.85 2.74 2.12 2.24 2.20
2 1.90 0.00 2.40 2.15 2.03 1.80 2.26 2.03 2.33 1.89 2.22 2.03
3 2.98 2.40 0.00 3.41 2.78 2.68 3.03 3.21 2.14 2.85 2.76 2.83
4 2.03 2.15 3.41 0.00 2.31 2.38 2.26 2.06 3.35 2.27 2.55 2.44
5 2.01 2.03 2.78 2.31 0.00 2.10 2.39 2.07 2.56 1.88 2.44 2.32
6 1.82 1.80 2.68 2.38 2.10 0.00 2.30 2.15 2.28 1.73 2.29 2.17
7 1.94 2.26 3.03 2.26 2.39 2.30 0.00 2.02 2.66 2.25 2.25 2.03
8 1.85 2.03 3.21 2.06 2.07 2.15 2.02 0.00 2.87 2.16 2.54 2.10
9 2.74 2.33 2.14 3.35 2.56 2.28 2.66 2.87 0.00 2.39 2.58 2.47
10 2.12 1.89 2.85 2.27 1.88 1.73 2.25 2.16 2.39 0.00 2.43 2.38
11 2.24 2.22 2.76 2.55 2.44 2.29 2.25 2.54 2.58 2.43 0.00 2.29
12 2.20 2.03 2.83 2.44 2.32 2.17 2.03 2.10 2.47 2.38 2.29 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

#123456789101112
1 1.00 0.78 0.66 0.75 0.76 0.77 0.79 0.82 0.69 0.73 0.75 0.73
2 0.78 1.00 0.72 0.75 0.75 0.80 0.74 0.76 0.74 0.77 0.75 0.76
3 0.66 0.72 1.00 0.66 0.71 0.73 0.64 0.67 0.77 0.72 0.69 0.69
4 0.75 0.75 0.66 1.00 0.71 0.74 0.76 0.76 0.64 0.71 0.74 0.75
5 0.76 0.75 0.71 0.71 1.00 0.77 0.71 0.79 0.70 0.78 0.73 0.73
6 0.77 0.80 0.73 0.74 0.77 1.00 0.71 0.74 0.75 0.81 0.73 0.76
7 0.79 0.74 0.64 0.76 0.71 0.71 1.00 0.75 0.68 0.72 0.77 0.76
8 0.82 0.76 0.67 0.76 0.79 0.74 0.75 1.00 0.67 0.75 0.74 0.75
9 0.69 0.74 0.77 0.64 0.70 0.75 0.68 0.67 1.00 0.77 0.71 0.71
10 0.73 0.77 0.72 0.71 0.78 0.81 0.72 0.75 0.77 1.00 0.71 0.73
11 0.75 0.75 0.69 0.74 0.73 0.73 0.77 0.74 0.71 0.71 1.00 0.76
12 0.73 0.76 0.69 0.75 0.73 0.76 0.76 0.75 0.71 0.73 0.76 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013