Download models Download Cα trajectory
Status: Done started: 2018-Jan-11 05:37:54 UTC
Project NameM.R
SequenceMQNSASEFLK PRLIDVQPVS ATHARVSMEP FERGYAHTLG NSLRRILLSS MPGYAPTEVT IAGVLHEYSA LDGVREDVVD ILLNLKGVVL KLHGRDSVVL TLKKEGEGAV LASDIELPHD VEVINPEHVI CHISSGGKID MEVKVEKGRG YQPVSARTSH DDNRSIGTIQ LDASFSPVRR VSFAVESARV EQRTDLDRLV LDIETNGVIE PEQAVRNAAR ILMDQLSIFA DLQGTAVEEV VEKAPPIDPI LLRPVDDLEL TVRSANCLKA ENIYYIGDLI QRTETELLKT PNLGRKSLNE IKEVLASKGL TLGMKLENWP PAGLEKP
Secondary structure

CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCHHHHHH HHHHCCCCCC CCCCEEEECC CCCCCCCCCC CCCCCCCHHH HHHHHHHCCE EECCCCCEEC CEEEECCCCC CCCCCCCCCC EEECCCCCCC CCCCCCCEEE ECCEEECCCC CCCHHHHCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC HHHHHHHHHH HHHHHHHHHH CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CHHHHHHHHH CCCCCHHHHH CCCHHHHCCC CCCCCHHHHH HHHHHHHHCC CCCCCCCCCC CCCCCCC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Jan-11 09:40 UTC
Project NameM.R
Cluster #123456789101112
Cluster density166.9108.3103.9102.496.284.176.066.563.360.648.341.6
Cluster size33621817819920416213314114210410479
Average cluster RMSD2.02.01.71.92.11.91.82.12.21.72.21.9

Read about clustering method.

#123456789101112
RMSD 7.05 7.06 6.12 6.24 5.98 6.45 5.47 5.86 5.97 7.40 5.65 6.08
GDT_TS 0.35 0.35 0.40 0.40 0.40 0.37 0.44 0.42 0.41 0.34 0.41 0.39

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

#123456789101112
1 0.00 2.84 5.40 4.71 6.04 3.28 4.87 4.45 6.24 2.96 4.57 5.40
2 2.84 0.00 5.44 4.82 6.21 3.54 4.94 4.67 6.53 2.71 4.78 5.63
3 5.40 5.44 0.00 3.45 3.37 4.01 3.40 4.33 3.96 5.66 4.71 3.41
4 4.71 4.82 3.45 0.00 4.17 4.06 3.13 3.35 4.07 5.06 4.20 3.24
5 6.04 6.21 3.37 4.17 0.00 4.76 3.55 4.64 3.35 6.43 5.05 3.40
6 3.28 3.54 4.01 4.06 4.76 0.00 3.67 4.00 5.14 3.90 4.19 4.67
7 4.87 4.94 3.40 3.13 3.55 3.67 0.00 3.33 4.06 5.11 3.50 3.82
8 4.45 4.67 4.33 3.35 4.64 4.00 3.33 0.00 4.22 4.77 3.19 4.11
9 6.24 6.53 3.96 4.07 3.35 5.14 4.06 4.22 0.00 6.79 4.73 3.60
10 2.96 2.71 5.66 5.06 6.43 3.90 5.11 4.77 6.79 0.00 4.83 5.82
11 4.57 4.78 4.71 4.20 5.05 4.19 3.50 3.19 4.73 4.83 0.00 4.68
12 5.40 5.63 3.41 3.24 3.40 4.67 3.82 4.11 3.60 5.82 4.68 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

#123456789101112
1 1.00 0.65 0.48 0.55 0.49 0.64 0.56 0.56 0.48 0.64 0.54 0.51
2 0.65 1.00 0.48 0.54 0.46 0.59 0.54 0.55 0.48 0.67 0.51 0.51
3 0.48 0.48 1.00 0.65 0.59 0.53 0.62 0.56 0.54 0.51 0.54 0.66
4 0.55 0.54 0.65 1.00 0.55 0.56 0.67 0.61 0.56 0.55 0.56 0.61
5 0.49 0.46 0.59 0.55 1.00 0.52 0.58 0.57 0.69 0.49 0.51 0.65
6 0.64 0.59 0.53 0.56 0.52 1.00 0.63 0.61 0.50 0.56 0.61 0.53
7 0.56 0.54 0.62 0.67 0.58 0.63 1.00 0.67 0.56 0.56 0.63 0.60
8 0.56 0.55 0.56 0.61 0.57 0.61 0.67 1.00 0.56 0.56 0.64 0.58
9 0.48 0.48 0.54 0.56 0.69 0.50 0.56 0.56 1.00 0.49 0.50 0.59
10 0.64 0.67 0.51 0.55 0.49 0.56 0.56 0.56 0.49 1.00 0.53 0.53
11 0.54 0.51 0.54 0.56 0.51 0.61 0.63 0.64 0.50 0.53 1.00 0.54
12 0.51 0.51 0.66 0.61 0.65 0.53 0.60 0.58 0.59 0.53 0.54 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013