Download models Download Cα trajectory
Status: Done started: 2018-Nov-18 08:43:06 UTC
Project Name
SequenceQCYHYDQTNR QGQGSHYSQP NRQGQSSHYG QPDTQDQSSH YGQTDRQDQS SHYGQTERQG QSSHYSQMDR QGQGSHYGQT DRQGQSSHYG QPDRQGQNSH YGQTDRQGQS SHYGQTDRQG QSSHYSQPDK QGQSSHYGKI DRQDQSYHYG QPDGQGQSSH YGQTDRQGQS FHYGQPDRQG QSSHYSQMDR QDQSSHYGQT DRQGQSSHYG QTDRQGQSYH YGQTDRQGQS SHYIQSQTGE IQGQNKYFQG TEGTRKASYV EQSGRSGRLS QQTPGQEGYQ NQGQGFQSRD SQQNGHQVWE
Secondary structure

CCCCEEEEEE CCCCCCCCCC CEEEEECCCC CCCCCEEEEE CCCCCCEEEE CCCCCCCCCC CCEEECCCCC CCCCCCEEEC CCEEECCCCC CCCCCEEECC CCCCEEECCC CCCCEEECCC CCCCCCCCCC CCCCCCCCCC CCCEEEECCC CCCEEEECCC CCCCCCCEEE CCCCCCCCCC CCCCCCCCEE EECCCCEEEE CCCCCEEEEC CCCCCCEEEE ECCCCCCCCC CCCCCCCCCC EECCCCCCEE ECCCCEEECC CCCCEEEEEE ECCCCEEEEE ECCCCEEECC CCCCCCEECC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Nov-18 12:41 UTC
Project Name
Cluster #123456789101112
Cluster density145.1132.1129.5128.5128.499.493.590.990.283.176.069.3
Cluster size217213200208212166159140144122111108
Average cluster RMSD1.51.61.51.61.71.71.71.51.61.51.51.6

Read about clustering method.

#123456789101112
RMSD 4.24 4.61 4.04 4.27 4.53 4.37 4.63 5.75 4.58 4.97 5.07 5.42
GDT_TS 0.53 0.50 0.51 0.51 0.51 0.51 0.48 0.45 0.49 0.47 0.48 0.46

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

#123456789101112
1 0.00 2.60 2.77 2.67 2.85 3.39 3.52 3.82 2.44 3.23 3.23 3.37
2 2.60 0.00 3.02 2.84 3.01 3.87 3.40 3.57 2.60 3.25 3.59 2.96
3 2.77 3.02 0.00 2.95 3.38 3.85 3.88 4.34 2.71 3.81 3.44 3.90
4 2.67 2.84 2.95 0.00 3.03 2.86 3.62 4.03 2.58 3.70 2.84 3.73
5 2.85 3.01 3.38 3.03 0.00 3.98 2.84 3.34 2.75 3.05 3.70 2.77
6 3.39 3.87 3.85 2.86 3.98 0.00 4.49 5.23 3.86 4.57 3.70 4.81
7 3.52 3.40 3.88 3.62 2.84 4.49 0.00 2.93 3.54 2.73 4.16 3.41
8 3.82 3.57 4.34 4.03 3.34 5.23 2.93 0.00 3.41 2.79 4.25 3.27
9 2.44 2.60 2.71 2.58 2.75 3.86 3.54 3.41 0.00 3.25 2.82 3.14
10 3.23 3.25 3.81 3.70 3.05 4.57 2.73 2.79 3.25 0.00 3.82 3.21
11 3.23 3.59 3.44 2.84 3.70 3.70 4.16 4.25 2.82 3.82 0.00 4.32
12 3.37 2.96 3.90 3.73 2.77 4.81 3.41 3.27 3.14 3.21 4.32 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

#123456789101112
1 1.00 0.68 0.61 0.64 0.65 0.58 0.60 0.56 0.66 0.60 0.57 0.60
2 0.68 1.00 0.63 0.69 0.60 0.56 0.61 0.57 0.69 0.59 0.59 0.60
3 0.61 0.63 1.00 0.62 0.59 0.53 0.55 0.50 0.64 0.57 0.58 0.54
4 0.64 0.69 0.62 1.00 0.62 0.63 0.59 0.56 0.68 0.55 0.67 0.56
5 0.65 0.60 0.59 0.62 1.00 0.55 0.64 0.60 0.65 0.62 0.60 0.64
6 0.58 0.56 0.53 0.63 0.55 1.00 0.52 0.47 0.55 0.49 0.54 0.48
7 0.60 0.61 0.55 0.59 0.64 0.52 1.00 0.63 0.58 0.65 0.58 0.58
8 0.56 0.57 0.50 0.56 0.60 0.47 0.63 1.00 0.59 0.65 0.56 0.58
9 0.66 0.69 0.64 0.68 0.65 0.55 0.58 0.59 1.00 0.60 0.67 0.59
10 0.60 0.59 0.57 0.55 0.62 0.49 0.65 0.65 0.60 1.00 0.55 0.60
11 0.57 0.59 0.58 0.67 0.60 0.54 0.58 0.56 0.67 0.55 1.00 0.53
12 0.60 0.60 0.54 0.56 0.64 0.48 0.58 0.58 0.59 0.60 0.53 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013