Download models Download Cα trajectory
Status: Done started: 2018-Mar-18 10:45:11 UTC
Project Name12sp
SequenceVDEQPLENYL DMEYFGTIGI GTPAQDFTVV FDTGSSNLWV PSVYCSSLAC TNHNRFNPED SSTYQSTSET VSITYGTGSM TGILGYDTVQ VGGISDTNQI FGLSETEPGS FLYYAPFDGI LGLAYPSISS SGATPVFDNI WNQGLVSQDL FSVYLSADDQ SGSVVIFGGI DSSYYTGSLN WVPVTVEGYW QITVDSITMN GEAIACAEGC QAIVDTGTSL LTGPTSPIAN IQSDIGASEN SDGDMVVSCS AISSLPDIVF TINGVQYPVP PSAYILQSEG SCISGFQGMN VPTESGELWI LGDVFIRQYF TVFDRANNQV GLAPVA
Secondary structure

CEEEECEEEC CCEEEEEEEE CCCCEEEEEE EECCCCCEEE ECCCCCCHHH HCCCCCCCCC CCCCCCCCCE EEEECCCCEE EEEEEEEEEE ECCEEEEEEE EEEEEECCCC HHHHCCCCEE EECCCCCCCC CCCCCHHHHH HHCCCCCCCE EEEECCCCCC CCCEEEECCC CCCCCCCCCE EEECCCCCCC EEEECEEEEC CEEEECCCCE EEEECCCCCC EEECHHHHHH HHHHCCCEEC CCCCEEECCC CCCCCCCEEE EECCEEEEEC HHHHEEECCC CEEECEEECC CEECCEEEEE ECHHHHCCEE EEEECCCCEE EEEECC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Mar-18 14:47 UTC
Project Name12sp
Cluster #123456789101112
Cluster density184.4168.1160.9154.8150.1135.4132.8119.4114.3112.7108.587.7
Cluster size223228199188189156154138143135144103
Average cluster RMSD1.21.41.21.21.31.21.21.21.31.21.31.2

Read about clustering method.

#123456789101112
RMSD 3.36 3.18 3.02 2.95 3.23 3.34 3.27 3.16 3.05 2.93 3.21 3.12
GDT_TS 0.59 0.65 0.62 0.63 0.60 0.61 0.60 0.61 0.66 0.64 0.63 0.61

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

#123456789101112
1 0.00 2.63 2.15 2.22 2.12 1.61 2.13 2.02 2.42 2.21 2.49 2.29
2 2.63 0.00 2.48 2.18 2.27 2.53 2.93 2.69 1.99 2.25 2.16 2.84
3 2.15 2.48 0.00 2.09 2.22 2.21 2.47 2.05 2.29 2.16 2.51 2.39
4 2.22 2.18 2.09 0.00 2.11 2.27 2.35 2.19 2.15 1.80 2.51 2.45
5 2.12 2.27 2.22 2.11 0.00 2.23 2.70 2.00 2.32 2.16 2.32 2.74
6 1.61 2.53 2.21 2.27 2.23 0.00 2.25 1.90 2.28 2.23 2.41 2.36
7 2.13 2.93 2.47 2.35 2.70 2.25 0.00 2.35 2.78 2.30 2.86 1.86
8 2.02 2.69 2.05 2.19 2.00 1.90 2.35 0.00 2.42 2.19 2.47 2.41
9 2.42 1.99 2.29 2.15 2.32 2.28 2.78 2.42 0.00 1.94 2.43 2.76
10 2.21 2.25 2.16 1.80 2.16 2.23 2.30 2.19 1.94 0.00 2.44 2.45
11 2.49 2.16 2.51 2.51 2.32 2.41 2.86 2.47 2.43 2.44 0.00 2.81
12 2.29 2.84 2.39 2.45 2.74 2.36 1.86 2.41 2.76 2.45 2.81 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

#123456789101112
1 1.00 0.68 0.73 0.72 0.72 0.81 0.75 0.76 0.68 0.71 0.66 0.72
2 0.68 1.00 0.71 0.75 0.72 0.70 0.69 0.67 0.79 0.74 0.73 0.68
3 0.73 0.71 1.00 0.73 0.73 0.74 0.70 0.75 0.70 0.72 0.68 0.70
4 0.72 0.75 0.73 1.00 0.76 0.71 0.72 0.71 0.73 0.79 0.68 0.67
5 0.72 0.72 0.73 0.76 1.00 0.71 0.68 0.74 0.69 0.74 0.71 0.66
6 0.81 0.70 0.74 0.71 0.71 1.00 0.72 0.78 0.69 0.70 0.67 0.70
7 0.75 0.69 0.70 0.72 0.68 0.72 1.00 0.70 0.65 0.70 0.67 0.77
8 0.76 0.67 0.75 0.71 0.74 0.78 0.70 1.00 0.68 0.72 0.67 0.68
9 0.68 0.79 0.70 0.73 0.69 0.69 0.65 0.68 1.00 0.76 0.68 0.66
10 0.71 0.74 0.72 0.79 0.74 0.70 0.70 0.72 0.76 1.00 0.69 0.69
11 0.66 0.73 0.68 0.68 0.71 0.67 0.67 0.67 0.68 0.69 1.00 0.65
12 0.72 0.68 0.70 0.67 0.66 0.70 0.77 0.68 0.66 0.69 0.65 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013