CABS-flex server
Download models Download Cα trajectory
Status: Done started: 2018-May-11 09:29:03 UTC
Project Namev9s9
SequenceMLKCAKFRAP LLLGPSSLSP LHSPAKLADS VSLTLRSLNI LDNVFDPGSR LDQVVMSCRR STSSKGGNGT K
Secondary structure

CCCCCCCCCC CCCCCCCCCC CCCHHHHHHH HCCCCCCCCC CHHHHCCCCC CCCCCCCCCC CCEEECCEEE C

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-May-11 13:57 UTC
Project Namev9s9
Clustering data
Cluster #123456789101112
Cluster density164.1145.8133.6102.978.277.260.445.945.144.940.138.7
Cluster size2842702322081851851299311911510179
Average cluster RMSD1.71.91.72.02.42.42.12.02.62.62.52.0

Read about clustering method.

Cα RMSD & GDT_TS to the input structure
#123456789101112
RMSD 7.14 8.88 9.27 6.58 6.91 6.78 8.04 7.50 7.10 6.49 7.54 5.67
GDT_TS 0.38 0.39 0.37 0.39 0.39 0.38 0.37 0.35 0.40 0.39 0.37 0.41

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

Cα RMSD between predicted models
#123456789101112
1 0.00 5.43 5.89 3.81 2.30 1.98 4.61 4.68 3.05 5.28 5.32 5.61
2 5.43 0.00 2.18 4.41 6.10 5.02 2.39 3.77 4.62 5.41 4.93 5.98
3 5.89 2.18 0.00 4.95 6.56 5.65 3.21 4.33 5.11 5.56 4.47 5.93
4 3.81 4.41 4.95 0.00 4.41 2.98 3.43 4.16 2.23 4.44 4.76 5.11
5 2.30 6.10 6.56 4.41 0.00 2.85 5.26 4.93 3.87 5.80 5.75 5.57
6 1.98 5.02 5.65 2.98 2.85 0.00 4.11 4.12 2.75 4.70 5.11 5.31
7 4.61 2.39 3.21 3.43 5.26 4.11 0.00 3.48 3.48 4.84 4.81 5.56
8 4.68 3.77 4.33 4.16 4.93 4.12 3.48 0.00 4.23 3.53 4.01 4.97
9 3.05 4.62 5.11 2.23 3.87 2.75 3.48 4.23 0.00 4.93 5.05 5.73
10 5.28 5.41 5.56 4.44 5.80 4.70 4.84 3.53 4.93 0.00 3.49 4.12
11 5.32 4.93 4.47 4.76 5.75 5.11 4.81 4.01 5.05 3.49 0.00 4.21
12 5.61 5.98 5.93 5.11 5.57 5.31 5.56 4.97 5.73 4.12 4.21 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

Cα GDT_TS between predicted models
#123456789101112
1 1.00 0.52 0.52 0.64 0.76 0.80 0.58 0.56 0.70 0.57 0.56 0.52
2 0.52 1.00 0.73 0.54 0.50 0.53 0.70 0.67 0.54 0.56 0.54 0.47
3 0.52 0.73 1.00 0.54 0.52 0.51 0.64 0.63 0.56 0.58 0.59 0.49
4 0.64 0.54 0.54 1.00 0.67 0.69 0.59 0.58 0.82 0.57 0.58 0.50
5 0.76 0.50 0.52 0.67 1.00 0.70 0.58 0.57 0.68 0.57 0.57 0.56
6 0.80 0.53 0.51 0.69 0.70 1.00 0.60 0.57 0.70 0.56 0.54 0.52
7 0.58 0.70 0.64 0.59 0.58 0.60 1.00 0.67 0.60 0.58 0.57 0.48
8 0.56 0.67 0.63 0.58 0.57 0.57 0.67 1.00 0.57 0.63 0.60 0.50
9 0.70 0.54 0.56 0.82 0.68 0.70 0.60 0.57 1.00 0.56 0.55 0.47
10 0.57 0.56 0.58 0.57 0.57 0.56 0.58 0.63 0.56 1.00 0.65 0.55
11 0.56 0.54 0.59 0.58 0.57 0.54 0.57 0.60 0.55 0.65 1.00 0.55
12 0.52 0.47 0.49 0.50 0.56 0.52 0.48 0.50 0.47 0.55 0.55 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013