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Explicit-Solvent All-Atom Molecular Dynamics of Peptide AggregationComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: From Bioinformatics to Molecular Quantum Mechanics 541–558, 2019.
The GOR Method of Protein Secondary Structure Prediction, and its Application as Protein Aggregation Prediction ToolMethods in Molecular Biology 1484, 7-24, 2017.
Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization stepProceedings of the National Academy of Sciences of the United States of America 108, 9443–8, 2011.
BioShell-Threading: versatile Monte Carlo package for protein 3D threading.BMC Bioinformatics 15, 22, 2014.
Distance matrix-based approach to protein structure predictionJournal of Structural and Functional Genomics 10, 67–81, 2009.
Distributions of amino acids suggest that certain residue types more effectively determine protein secondary structureJournal of Molecular Modeling 19, 4337-48, 2013.
Elastic network normal modes provide a basis for protein structure refinementThe Journal of Chemical Physics 136, 195101, 2012.
Fast and Accurate Accessible Surface Area Prediction Without a Sequence ProfileMethods in Molecular Biology 1484, 127-136, 2017.
Fast learning optimized prediction methodology (FLOPRED) for protein secondary structure predictionJournal of Molecular Modeling 18, 4275–89, 2012.
How noise in force fields can affect the structural refinement of protein models?Proteins 80, 335–341, 2012.
Ideal amino acid exchange forms for approximating substitution matricesProteins: Structure, Function, Bioinformatics 69, 379–393, 2007.
Inferring ideal amino acid interaction forms from statistical protein contact potentialsProteins 59, 49–57, 2005.
Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational studyThe Journal of Chemical Physics 148, 215106, 2018.
Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network ModelsInternational Journal of Molecular Sciences 19, , 2018.
Oligomerization of FVFLM peptides and their ability to inhibit beta amyloid peptides aggregation: consideration as a possible modelPhysical Chemistry Chemical Physics 19, 2990-9, 2017.
Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecABiophysical journal 94, 2482–91, 2008.
REFOLDING OF HOMOPOLYMER UNDER QUENCHED FORCEVietnam Journal of Science and Technology 55 (6A), 1-8, 2017.