Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions



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Author Title [ Type(Desc)] Year
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Book Chapter
Explicit-Solvent All-Atom Molecular Dynamics of Peptide AggregationKouza, M., Koliński, A., Buhimschi, I. & Kloczkowski, A.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: From Bioinformatics to Molecular Quantum Mechanics 541–558, 2019.
Conference Proceedings
Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization stepSteczkiewicz, K. et al.Proceedings of the National Academy of Sciences of the United States of America 108, 9443–8, 2011.
Protein secondary structure prediction using knowledge-based potentialsSaraswathi, S., Jernigan, R.L., Kloczkowski, A. & Koliński, A.International Conference on Fuzzy Computation and 2nd International Conference on Neural Computation 370-375, 2010.
Journal Article
Distance matrix-based approach to protein structure predictionKloczkowski, A. et al.Journal of Structural and Functional Genomics 10, 67–81, 2009.
Ideal amino acid exchange forms for approximating substitution matricesPokarowski, P. et al.Proteins: Structure, Function, Bioinformatics 69, 379–393, 2007.
REFOLDING OF HOMOPOLYMER UNDER QUENCHED FORCEKouza, M., Kloczkowski, A., Lan, P.Dang & Li, M.SuanVietnam Journal of Science and Technology 55 (6A), 1-8, 2017.