Andrzej Kolinski Research Group

Coarse-grained protein modeling

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Modeling Software & Servers

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Biomolecules — dynamics & interactions

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Publications

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Author Title Type [ Year(Asc)]
Filters: Author is Michal Kolinski  [Clear All Filters]
2021
Molecular Dynamics Scoring of Protein–Peptide Models Derived from Coarse-Grained DockingZalewski, M., Kmiecik, S. & Kolinski, M.Molecules 26(11), , 2021.
2020
Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinementBadaczewska-Dawid, A.E., Kmiecik, S. & Kolinski, M.Briefings in Bioinformatics , 2020.
Flexible docking of peptides to proteins using CABS-dockKurcinski, M., Badaczewska-Dawid, A.E., Kolinski, M., Koliński, A. & Kmiecik, S.Protein Science, 29:211-222 , 2020.
2019
Protein Dynamics Simulations Using Coarse-Grained ModelsKmiecik, S., Wabik, J., Kolinski, M., Kouza, M. & Koliński, A.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: From Bioinformatics to Molecular Quantum Mechanics 61–87, 2019.
Protein Structure Prediction Using Coarse-Grained ModelsBlaszczyk, M. et al.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: From Bioinformatics to Molecular Quantum Mechanics 27–59, 2019.
2018
Design and synthesis of novel 1H-tetrazol-5-amine based potent antimicrobial agents: DNA topoisomerase IV and gyrase affinity evaluation supported by molecular docking studiesSzulczyk, D. et al.European Journal of Medicinal Chemistry 156, 631 - 640, 2018.
2016
5-HT2 receptor affinity, docking studies and pharmacological evaluation of a series of 1,3-disubstituted thiourea derivativesBielenica, A. et al.European Journal of Medicinal Chemistry 116, 173–186, 2016.
Coarse-Grained Protein Models and Their ApplicationsKmiecik, S. et al.Chemical Reviews 116, 7898–7936, 2016.
Coarse-grained simulations of membrane insertion and folding of small helical proteins using CABS modelPulawski, W., Jamroz, M., Kolinski, M., Koliński, A. & Kmiecik, S.Journal of Chemical Information and Modeling 56, 2207–2215, 2016.
2014
Coarse-Grained Modeling of Protein DynamicsKmiecik, S., Wabik, J., Kolinski, M., Kouza, M. & Koliński, A.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes, Springer Series in Bio-/Neuroinformatics, Adam Liwo, Ed. 1, 55-79, 2014.
Structure prediction of the second extracellular loop in G-protein-coupled receptorsKmiecik, S., Jamroz, M. & Kolinski, M.Biophysical Journal 106, 2408–2416, 2014.
2012
Modelowanie Molekularne Białek Błonowych (Molecular Modeling of Membrane Proteins)Dawid, A., Kolinski, M., Koliński, A. & Kmiecik, S.Na pograniczu chemii i biologii (At the Treshold of Chemistry and Biology) vol. XXVIII, H. Koroniak, J. Barciszewski eds, Wydawnictwo Naukowe UAM, Poznań 223-238, 2012.