Andrzej Kolinski Research Group

Coarse-grained protein modeling

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Modeling Software & Servers

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Biomolecules — dynamics & interactions

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Publications

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Author Title Type [ Year(Asc)]
Filters: Author is Aleksandra E. Badaczewska-Dawid  [Clear All Filters]
2020
Computational reconstruction of atomistic protein structures from coarse-grained modelsBadaczewska-Dawid, A.E., Koliński, A. & Kmiecik, S.Computational and Structural Biotechnology Journal 18, 162-176, 2020.
Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinementBadaczewska-Dawid, A.E., Kmiecik, S. & Kolinski, M.Briefings in Bioinformatics , 2020.
Flexible docking of peptides to proteins using CABS-dockKurcinski, M., Badaczewska-Dawid, A.E., Kolinski, M., Koliński, A. & Kmiecik, S.Protein Science, 29:211-222 , 2020.
Protocols for All-Atom Reconstruction and High-Resolution Refinement of Protein–Peptide Complex StructuresBadaczewska-Dawid, A.E., Khramushin, A., Koliński, A., Schueler-Furman, O. & Kmiecik, S.Protein Structure Prediction 273–287, 2020.
Protocols for Fast Simulations of Protein Structure Flexibility Using CABS-Flex and SURPASSBadaczewska-Dawid, A.E., Koliński, A. & Kmiecik, S.Protein Structure Prediction 337–353, 2020.
2019
CABS-dock standalone: a toolbox for flexible protein-peptide dockingCiemny, M. et al.Bioinformatics btz185, , 2019.
Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force FieldsCiemny, M., Badaczewska-Dawid, A.E., Pikuzinska, M., Koliński, A. & Kmiecik, S.International Journal of Molecular Sciences 20, , 2019.