Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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Journal Article
TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraintsKihara, D., Lu, H., Koliński, A. & Skolnick, J.Proceedings of the National Academy of Sciences of the United States of America 98, 10125–30, 2001.
Theoretical model of prion propagation: a misfolded protein induces misfoldingMałolepsza, E., Boniecki, M., Koliński, A. & Piela, L.Proceedings of the National Academy of Sciences of the United States of America 102, 7835–40, 2005.
A Stevedore's protein knot.Bölinger, D. et al.PLoS Comput Biol 6, e1000731, 2010.
Stabilizing effect of knots on proteins.Sulkowska, J.I., Sulkowski, P., Szymczak, P. & Cieplak, M.Proceedings of the National Academy of Sciences of the United States of America 105, 19714-9, 2008.
Slipknotting upon native-like loop formation in a trefoil knot protein.Noel, J.K., Sulkowska, J.I. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 107, 15403-8, 2010.
On the remarkable mechanostability of scaffoldins and the mechanical clamp motif.Valbuena, A. et al.Proceedings of the National Academy of Sciences of the United States of America 106, 13791-6, 2009.
Nativelike topology assembly of small proteins using predicted restraints in Monte Carlo folding simulationsOrtiz, A.R., Koliński, A. & Skolnick, J.Proceedings of the National Academy of Sciences of the United States of America 95, 1020–1025, 1998.

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