Andrzej Kolinski Research Group

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Publications

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B
DNA vaccine expressing the mimotope of GD2 ganglioside induces protective GD2 cross-reactive antibody responsesBolesta, E. et al.Cancer Research 65, 3410–8, 2005.
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De novo and inverse folding predictions of protein structure and dynamicsGodzik, A., Koliński, A. & Skolnick, J.Journal of Computer-Aided Molecular Design 7, 397–438, 1993.
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Distance matrix-based approach to protein structure predictionKloczkowski, A. et al.Journal of Structural and Functional Genomics 10, 67–81, 2009.
Denatured proteins and early folding intermediates simulated in a reduced conformational spaceKmiecik, S., Kurcinski, M., Rutkowska, A., Gront, D. & Koliński, A.Acta Biochimica Polonica 53, 131–143, 2006.
Designing an Automatic Pipeline for Protein Structure Prediction Designing an Automatic Pipeline for Protein Structure PredictionKmiecik, S. et al.From Computational Biophysics to Systems Biology (CBSB08) 40, 105–108, 2008.
Determinants of secondary structure of polypeptide chains: Interplay between short range and burial interactionsKoliński, A. & Skolnick, J.Journal of Chemical Physics 107, 953–964, 1997.
Dynamic Monte Carlo study of the conformational properties of long flexible polymersKoliński, A., Skolnick, J. & Yaris, R.Macromolecules 20, 687–689, 1987.
Discretized model of proteins. I. Monte Carlo study of cooperativity in homopolypeptidesKoliński, A. & Skolnick, J.Journal of Chemical Physics 97, 9412–9426, 1992.
Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniquesKoliński, A., Ilkowski, B. & Skolnick, J.Biophysical Journal 77, 2942–52, 1999.
Does reptation describe the dynamics of entangled, finite length polymer systems? A model simulationKoliński, A., Skolnick, J. & Yaris, R.The Journal of Chemical Physics 86, 1567–1585, 1987.
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Dependence of protein mechanical unfolding pathways on pulling speedsLi, M.Suan & Kouza, M.The Journal of Chemical Physics 130, 145102, 2009.
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De novo simulations of the folding thermodynamics of the GCN4 leucine zipperMohanty, D., Koliński, A. & Skolnick, J.Biophysical Journal 77, 54–69, 1999.
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Does a backwardly read protein sequence have a unique native state?Olszewski, K.A., Koliński, A. & Skolnick, J.Protein Engineering 9, 5–14, 1996.
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Distributions of amino acids suggest that certain residue types more effectively determine protein secondary structureSaraswathi, S., Fernández-Martínez, J.L., Koliński, A., Jernigan, R.L. & Kloczkowski, A.Journal of Molecular Modeling 19, 4337-48, 2013.
A detailed 1H and 13C NMR study of a repeating disaccharide of hyaluronan: the effect of sodium and calcium ionsSicinska, W. & Lerner, L.E.Carbohydrate Research 286, 151-159, 1996.
A detailed 1H and 13C NMR study of a repeating disaccharide of hyaluronan: the effects of temperature and counterion typeSicinska, W., Adams, B. & Lerner, L.Carbohydrate Research 242, 29 - 51, 1993.
A detailed 1H and 13C NMR study of a repeating disaccharide of hyaluronan: the effect of sodium and calcium ionsSicinska, W. & Lerner, L.E.Carbohydrate Research 286, 151 - 159, 1996.
DFT Calculation of Nitrogen Chemical Shifts in the Active Site of Vitamin D ReceptorSicinska, W.Polish Journal of Chemistry Vol. 80, no 7, 1171–1183, 2006.
Dynamics of star branched polymers in a matrix of linear chains—a Monte Carlo studySikorski, A., Koliński, A. & Skolnick, J.Macromolecular Theory and Simulations 3, 715–729, 1994.
Dynamic Monte Carlo study of the folding of a six-stranded Greek key globular proteinSkolnick, J., Koliński, A. & Yaris, R.Proceedings of the National Academy of Sciences of the United States of America 86, 1229–1233, 1989.
Dynamic Monte Carlo Globular Protein Folding and StructureSkolnick, J., Koliński, A. & Sikorski, A.Chemical Design Automation News 5, 1–20, 1990.
Derivation of protein-specific pair potentials based on weak sequence fragment similaritySkolnick, J., Koliński, A. & Ortiz, A.Proteins: Structure, Function, Bioinformatics 38, 3–16, 2000.
Dynamic Monte Carlo Simulation of a melt of ring polymersSkolnick, J., Koliński, A., Sikorski, A. & Yaris, R.Polymer Preprints 30, 70–73, 1989.
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?Skolnick, J., Jaroszewski, L., Koliński, A. & Godzik, A.Protein Science 6, 676–688, 1997.
De novo predictions of the quaternary structure of leucine zippers and other coiled coilsSkolnick, J., Koliński, A. & Mohanty, D.International Journal of Quantum Chemistry 75, 165–176, 1999.

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