Andrzej Kolinski Research Group

Coarse-grained protein modeling

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Modeling Software & Servers

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Biomolecules — dynamics & interactions

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Publications

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Author Title Type [ Year(Asc)]
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2017
Highly flexible protein-peptide docking using CABS-dockCiemny, M., Kurcinski, M., Kozak, K., Koliński, A. & Kmiecik, S.Methods in Molecular Biology 1561, 69-94, 2017.
2013
Hysteresis as a Marker for Complex, Overlapping Landscapes in Proteins.Andrews, B.T., Capraro, D.T., Sulkowska, J.I., Onuchic, J.N. & Jennings, P.A.Journal of Physicak Chemistry Letters 4, 180-188, 2013.
2012
How noise in force fields can affect the structural refinement of protein models?Gniewek, P., Koliński, A., Jernigan, R.L. & Kloczkowski, A.Proteins 80, 335–341, 2012.
2011
Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization stepSteczkiewicz, K. et al.Proceedings of the National Academy of Sciences of the United States of America 108, 9443–8, 2011.
2007
Hierarchical modeling of protein interactionsKurcinski, M. & Koliński, A.Journal of Molecular Modeling 13, 691–698, 2007.
2006
High throughput method for protein structure predictionGront, D. et al.NIC Workshop 2006: From Computational Biophysics to System Biology 34, 79-82, 2006.
2005
HCPM–program for hierarchical clustering of protein modelsGront, D. & Koliński, A.Bioinformatics 21, 3179–80, 2005.
2000
Helix-coil and beta sheet-coil transitions in a simplified, yet realistic protein modelIlkowski, B., Skolnick, J. & Koliński, A.Macromolecular Theory and Simulations 9, 523–533, 2000.
1999
Hydrogen-bond and solvent polarity effects on the nitrogen NMR shielding of urea systemsWitanowski, M., Sicinska, W., Biedrzycka, Z. & Webb, G.A.Journal of Molecular Structure 476, 133 - 138, 1999.
1997
High coordination lattice models of protein structure, dynamics and thermodynamicsKoliński, A. & Skolnick, J.Acta Biochim Polonica 44, 389–422, 1997.
Hydrogen Bonding and Solvent Polarity Effects on the Nitrogen NMR Shielding of 1,2,4,5-TetrazineWitanowski, M., Biedrzycka, Z., Sicinska, W., Grabowski, Z. & Webb, G.A.Journal of Magnetic Resonance 124, 127 - 131, 1997.
1996
A hierarchical approach to the prediction of the quaternary structure of GCN4 and its mutantsVieth, M., Koliński, A., Brooks, III, C.L. & Skolnick, J.DIMACS Series in Discrete Mathematics and Theoretical Computer Science 23, 233–236, 1996.