Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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2019
Protein Dynamics Simulations Using Coarse-Grained ModelsKmiecik, S., Wabik, J., Kolinski, M., Kouza, M. & Koliński, A.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: From Bioinformatics to Molecular Quantum Mechanics 61–87, 2019.
Protein Structure Prediction Using Coarse-Grained ModelsBlaszczyk, M. et al.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: From Bioinformatics to Molecular Quantum Mechanics 27–59, 2019.
2014
Pierced Lasso Bundles are a New Class of Knot MotifsHaglund, E. et al.PLoS computational biology 10(6), , 2014.
Protocols for efficient simulations of long time protein dynamics using coarse-grained CABS modelJamroz, M., Koliński, A. & Kmiecik, S.Protein structure prediction (3rd Edition), Methods in Molecular Biology, Daisuke Kihara, Ed. 1137, 235-250, 2014.
2012
Protein Structure Prediction Using CABS – A Consensus ApproachBlaszczyk, M., Jamroz, M., Gront, D. & Koliński, A.From Computational Biophysics to Systems Biology (CBSB11) Proceedings 8, 29–32, 2012.
2011
PrefaceKoliński, A. & Koliński, A.Multiscale Approaches to Protein Modeling , 2011.
2010
Protein secondary structure prediction using knowledge-based potentialsSaraswathi, S., Jernigan, R.L., Kloczkowski, A. & Koliński, A.International Conference on Fuzzy Computation and 2nd International Conference on Neural Computation 370-375, 2010.

Pages