Publications
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Author [ Title] Type Year Filters: First Letter Of Title is D and Author is Jeffrey Skolnick [Clear All Filters]
De novo and inverse folding predictions of protein structure and dynamicsJournal of Computer-Aided Molecular Design 7, 397–438, 1993.
De novo predictions of the quaternary structure of leucine zippers and other coiled coilsInternational Journal of Quantum Chemistry 75, 165–176, 1999.
De novo simulations of the folding of GCN4 and its mutantsModeling of Biomolecular Structures and Mechanisms 8, 95–98, 1995.
De novo simulations of the folding thermodynamics of the GCN4 leucine zipperBiophysical Journal 77, 54–69, 1999.
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?Protein Science 6, 676–688, 1997.
Derivation of protein-specific pair potentials based on weak sequence fragment similarityProteins: Structure, Function, Bioinformatics 38, 3–16, 2000.
Determinants of secondary structure of polypeptide chains: Interplay between short range and burial interactionsJournal of Chemical Physics 107, 953–964, 1997.
Discretized model of proteins. I. Monte Carlo study of cooperativity in homopolypeptidesJournal of Chemical Physics 97, 9412–9426, 1992.
Does a backwardly read protein sequence have a unique native state?Protein Engineering 9, 5–14, 1996.
Does reptation describe the dynamics of entangled, finite length polymer systems? A model simulationThe Journal of Chemical Physics 86, 1567–1585, 1987.
Dynamic Monte Carlo Globular Protein Folding and StructureChemical Design Automation News 5, 1–20, 1990.
Dynamic Monte Carlo Simulations of a new lattice model of globular protein folding, structure, and dynamicsJournal of Molecular Biology 221, 499–531, 1991.
Dynamic Monte Carlo Simulations of Globular Protein Folding, Structure and DynamicsComments on Molecular & Cell Biology 6, 223-247, 1990.
Dynamic Monte Carlo simulations of globular protein folding/unfolding pathways: I. Six-member, Greek Key beta-Barrel proteinsJournal of Molecular Biology 212, 787–817, 1990.
Dynamic Monte Carlo study of the conformational properties of long flexible polymersMacromolecules 20, 687–689, 1987.
Dynamic Monte Carlo study of the folding of a six-stranded Greek key globular proteinProceedings of the National Academy of Sciences of the United States of America 86, 1229–1233, 1989.
Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniquesBiophysical Journal 77, 2942–52, 1999.
Dynamics of dense polymer systems: Computer simulations and analytic theoriesAdvances in Chemical Physics 77, 223–278, 1990.
Dynamics of star branched polymers in a matrix of linear chains—a Monte Carlo studyMacromolecular Theory and Simulations 3, 715–729, 1994.