Publications
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Mechanical unfolding of acylphosphatase studied by single-molecule force spectroscopy and MD simulationsBiophys J 99, 238-47, 2010.
Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motifBioMedical Engineering OnLine, 16:71 , 2017.
Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force FieldsInternational Journal of Molecular Sciences 20, , 2019.
Modelowanie Molekularne Białek Błonowych (Molecular Modeling of Membrane Proteins)Na pograniczu chemii i biologii (At the Treshold of Chemistry and Biology) vol. XXVIII, H. Koroniak, J. Barciszewski eds, Wydawnictwo Naukowe UAM, Poznań 223-238, 2012.
Modeling Protein Structures and their Complexes with Sparse Experimental DataFrom Computational Biophysics to Systems Biology (CBSB11) Proceedings 8, 49–52, 2012.
Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network ModelsInternational Journal of Molecular Sciences 19, , 2018.
Multiscale approach to protein folding dynamicsMultiscale Approaches to Protein Modeling 281-294, 2011.
Modeling protein structure, dynamics and thermodynamics with reduced representation of conformational spaceNIC Workshop 2006: From Computational Biophysics to System Biology 34, 21-28, 2006.
Monte Carlo study of dynamics of the multichain polymer system on the tetrahedral latticeThe Journal of Chemical Physics 79, 1523-1526, 1983.
Monte Carlo studies of the thermodynamics and kinetics of reduced protein models: Application to small helical, β, and α / β proteinsJournal of Chemical Physics 108, 2608–2617, 1998.
Monte Carlo dynamics of diamond-lattice multichain systemsAIP Conference Proceedings 137, 241–245, 1986.
Monte Carlo studies on equilibrium globular protein folding. I. Homopolymeric lattice models of beta-barrel proteinsBiopolymers 26, 937–62, 1987.
A method for the prediction of surface "U"-turns and transglobular connections in small proteinsProteins 27, 290–308, 1997.
Monte Carlo studies on the long time dynamic properties of dense cubic lattice multichain systems. II. Probe polymer in a matrix of different degrees of polymerizationThe Journal of Chemical Physics 86, 7174–7180, 1987.
Monte Carlo simulations on an equilibrium globular protein folding modelProceedings of the National Academy of Sciences of the United States of America 83, 7267–71, 1986.
Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambinProteins: Structure, Function, Bioinformatics 18, 353–366, 1994.
Monte Carlo study of star-branched polymers on the tetrahedral lattice. I. Conformation of the macromoleculeJournal of Polymer Science: Polymer Chemistry Edition 20, 3147–3154, 1982.
Monte Carlo simulations of protein folding. I. Lattice model and interaction schemeProteins 18, 338-52, 1994.
Monte Carlo study of local orientational order in a semiflexible polymer melt modelMacromolecules 19, 2550–2560, 1986.
Monte carlo calculations of the ⊝ point of star-branched macromolecules on tetrahedral latticeJournal of Polymer Science: Polymer Letters Edition 20, 177–180, 1982.
Monte Carlo studies on the long time dynamic properties of dense cubic lattice multichain systems. I. The homopolymeric meltThe Journal of Chemical Physics 86, 7164–7174, 1987.