Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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2012
Protein Structure Prediction Using CABS – A Consensus ApproachBlaszczyk, M., Jamroz, M., Gront, D. & Koliński, A.From Computational Biophysics to Systems Biology (CBSB11) Proceedings 8, 29–32, 2012.
2019
Protein Structure Prediction Using Coarse-Grained ModelsBlaszczyk, M. et al.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: From Bioinformatics to Molecular Quantum Mechanics 27–59, 2019.
2018
Protein-peptide docking: opportunities and challengesCiemny, M.Pawel et al.Drug Discovery Today 23, 1530-1537, 2018.
2002
2005
Protein structure prediction by tempering spatial constraintsGront, D., Koliński, A. & Hansmann, U.H.E.Journal of Computer-Aided Molecular Design 19, 603–8, 2005.
2014
Pierced Lasso Bundles are a New Class of Knot MotifsHaglund, E. et al.PLoS computational biology 10(6), , 2014.
Protocols for efficient simulations of long time protein dynamics using coarse-grained CABS modelJamroz, M., Koliński, A. & Kmiecik, S.Protein structure prediction (3rd Edition), Methods in Molecular Biology, Daisuke Kihara, Ed. 1137, 235-250, 2014.
2019
Protein Dynamics Simulations Using Coarse-Grained ModelsKmiecik, S., Wabik, J., Kolinski, M., Kouza, M. & Koliński, A.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: From Bioinformatics to Molecular Quantum Mechanics 61–87, 2019.
2000
Protein Folding: Flexible Lattice ModelsKoliński, A., Rotkiewicz, P., Ilkowski, B. & Skolnick, J.Progress of Theoretical Physics Supplement 138, 292–300, 2000.
2011
PrefaceKoliński, A. & Koliński, A.Multiscale Approaches to Protein Modeling , 2011.

Pages