Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network ModelsInternational Journal of Molecular Sciences 19, , 2018.
Mutation goals in the vitamin D receptor predicted by computational methods.The Journal of Steroid Biochemistry and Molecular Biology 183, 210-220, 2018.
Protein–peptide docking using CABS-dock and contact informationBriefings in Bioinformatics bby080, 2018.
Role of Resultant Dipole Moment in Mechanical Dissociation of Biological ComplexesMolecules 23(8), 1995, 2018.
Fast and Accurate Accessible Surface Area Prediction Without a Sequence ProfileMethods in Molecular Biology 1484, 127-136, 2017.
The GOR Method of Protein Secondary Structure Prediction, and its Application as Protein Aggregation Prediction ToolMethods in Molecular Biology 1484, 7-24, 2017.
Highly flexible protein-peptide docking using CABS-dockMethods in Molecular Biology 1561, 69-94, 2017.
Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motifBioMedical Engineering OnLine, 16:71 , 2017.
Oligomerization of FVFLM peptides and their ability to inhibit beta amyloid peptides aggregation: consideration as a possible modelPhysical Chemistry Chemical Physics 19, 2990-9, 2017.
One-Dimensional Structural Properties of Proteins in the Coarse-Grained CABS ModelMethods in Molecular Biology 1484, 83-113, 2017.
Predicting real-valued protein residue fluctuation using FlexPredMethods in Molecular Biology 1484, 175-186, 2017.
A protocol for CABS-dock protein–peptide docking driven by side-chain contact informationBioMedical Engineering OnLine, 16:73 , 2017.
REFOLDING OF HOMOPOLYMER UNDER QUENCHED FORCEVietnam Journal of Science and Technology 55 (6A), 1-8, 2017.
SURPASS Low-Resolution Coarse-Grained Protein ModelingJournal of Chemical Theory and Computation 13(11), 5766-5779, 2017.
Switch from thermal to force-driven pathways of protein refoldingThe Journal of Chemical Physics 146, 135101, 2017.
5-HT2 receptor affinity, docking studies and pharmacological evaluation of a series of 1,3-disubstituted thiourea derivativesEuropean Journal of Medicinal Chemistry 116, 173–186, 2016.
Coarse-grained simulations of membrane insertion and folding of small helical proteins using CABS modelJournal of Chemical Information and Modeling 56, 2207–2215, 2016.
Flexible protein-peptide docking using CABS-dock with knowledge about the binding siteProceedings of the International Work-conference on Bioinformatics and BIOmedical engineering (IWWBIO) in Granada, Spain, 195-201, arXiv:1605.09269 , 2016.