Andrzej Kolinski Research Group

Coarse-grained protein modeling

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Publications

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1999
Ab initio folding of proteins using restraints derived from evolutionary informationOrtiz, A.R., Koliński, A., Rotkiewicz, P., Ilkowski, B. & Skolnick, J.Proteins Suppl. 3, 177–185, 1999.
1998
Assembly of protein structure from sparse experimental data: an efficient Monte Carlo modelKoliński, A. & Skolnick, J.Proteins 32, 475–494, 1998.
Nativelike topology assembly of small proteins using predicted restraints in Monte Carlo folding simulationsOrtiz, A.R., Koliński, A. & Skolnick, J.Proceedings of the National Academy of Sciences of the United States of America 95, 1020–1025, 1998.
Tertiary structure prediction of the KIX domain of CBP using Monte Carlo simulations driven by restraints derived from multiple sequence alignmentsOrtiz, A.R., Koliński, A. & Skolnick, J.Proteins 30, 287–294, 1998.
1997
A method for the prediction of surface "U"-turns and transglobular connections in small proteinsKoliński, A., Skolnick, J., Godzik, A. & Hu, W.-P.Proteins 27, 290–308, 1997.
MONSSTER: a method for folding globular proteins with a small number of distance restraintsSkolnick, J., Koliński, A. & Ortiz, A.R.Journal of Molecular Biology 265, 217–241, 1997.
1992
Effect of double bonds on the dynamics of hydrocarbon chainsRey, A., Koliński, A., Skolnick, J. & Levine, Y.K.Journal of Chemical Physics 97, 1240–1249, 1992.
1989
Monte Carlo studies on equilibrium globular protein folding. II. Beta-barrel globular protein modelsSkolnick, J., Koliński, A. & Yaris, R.Biopolymers 28, 1059–95, 1989.

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