Inferring ideal amino acid interaction forms from statistical protein contact potentialsProteins 59, 49–57, 2005.
Mechanical strength of 17,134 model proteins and cysteine slipknots.PLoS Comput Biol 5, e1000547, 2009.
A method for the prediction of surface "U"-turns and transglobular connections in small proteinsProteins 27, 290–308, 1997.
A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native stateBiophysical Journal 84, 1518–26, 2003.
A minimal proteinlike lattice model: an alpha-helix motifThe Journal of Chemical Physics 122, 214915, 2005.
Monte Carlo studies on equilibrium globular protein folding. I. Homopolymeric lattice models of beta-barrel proteinsBiopolymers 26, 937–62, 1987.
Monte Carlo studies on equilibrium globular protein folding. II. Beta-barrel globular protein modelsBiopolymers 28, 1059–95, 1989.
A new approach to prediction of short-range conformational propensities in proteinsBioinformatics (Oxford, England) 21, 981–987, 2005.
New force replica exchange method and protein folding pathways probed by force-clamp techniqueThe Journal of Chemical Physics 128, 045103, 2008.
Protein Folding with a Reduced Model and Inaccurate Short-Range RestraintsMacromolecular Theory and Simulations 14, 444–451, 2005.
Protein fragment reconstruction using various modeling techniquesJournal of Computer-Aided Molecular Design 17, 725–38, 2003.
Protein mechanical unfolding: Importance of non-native interactionsThe Journal of Chemical Physics 131, 215103, 2009.
Protein modeling and structure prediction with a reduced representationActa Biochimica Polonica 51, 349–71, 2004.