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De novo and inverse folding predictions of protein structure and dynamicsJournal of Computer-Aided Molecular Design 7, 397–438, 1993.
Optimization of profile-to-profile alignment parameters for one-dimensional threadingJournal of Computational Biology 19, 879–86, 2012.
How noise in force fields can affect the structural refinement of protein models?Proteins 80, 335–341, 2012.
Coarse-grained Monte Carlo simulations of mucus: structure, dynamics, and thermodynamicsBiophysical Journal 99, 3507–16, 2010.
BioShell-Threading: versatile Monte Carlo package for protein 3D threading.BMC Bioinformatics 15, 22, 2014.
Note: A simple picture of subdiffusive polymer motion from stochastic simulationsThe Journal of Chemical Physics 134, 056101, 2011.
Elastic network normal modes provide a basis for protein structure refinementThe Journal of Chemical Physics 136, 195101, 2012.
Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein SolubilityMolecular Pharmaceutics 15, 3846-3859, 2018.