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Derivation of protein-specific pair potentials based on weak sequence fragment similaritySkolnick, J., Koliński, A. & Ortiz, A.Proteins: Structure, Function, Bioinformatics 38, 3–16, 2000.
Dynamic Monte Carlo Simulations of a new lattice model of globular protein folding, structure, and dynamicsSkolnick, J. & Koliński, A.Journal of Molecular Biology 221, 499–531, 1991.
Dynamics of dense polymer systems: Computer simulations and analytic theoriesSkolnick, J. & Koliński, A.Advances in Chemical Physics 77, 223–278, 1990.
Monte Carlo lattice dynamics and the prediction of protein foldsSkolnick, J., Koliński, A., van Gunsteren, W.F., Weiner, P.K. & Wilkinson, A.J.Computer Simulations of Biomolecular Systems. Theoretical and Experimental Applications pp, 395–429, 1997.
De Novo Prediction of Protein Tertiary StructureSkolnick, J. & Koliński, A.Polymer Preprints 35, 82–83, 1994.
Phenomenological Theory of Polymer Melt DynamicsSkolnick, J., Yaris, R. & Koliński, A.International Journal of Modern Physics B 3, 33-64, 1989.
Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinementSkolnick, J. et al.Proteins 45, 149–156, 2001.
A unified approach to the prediction of protein structure and functionSkolnick, J. & Koliński, A.Advances in Chemical Physics 120, 131–192, 2002.
Monte Carlo studies on equilibrium globular protein folding. II. Beta-barrel globular protein modelsSkolnick, J., Koliński, A. & Yaris, R.Biopolymers 28, 1059–95, 1989.
The role of computational biology in the genomics revolutionSkolnick, J., Fetrow, J.S., Ortiz, A.R. & Koliński, A.Impact of Advances in Computing and Communications Technologies on Chemical Sciences and Technology, Proceedings of the National Research Council pp, 44–61, 1999.
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?Skolnick, J., Jaroszewski, L., Koliński, A. & Godzik, A.Protein Science 6, 676–688, 1997.
Monte Carlo studies of the long-time dynamics of dense polymer systems. The failure of the reptation modelSkolnick, J., Koliński, A. & Yaris, R.Accounts of Chemical Research 20, 350–356, 1987.
From independent modules to molten globules: observations on the nature of protein folding intermediatesSkolnick, J., Koliński, A. & Godzik, A.Proceedings of the National Academy of Sciences of the United States of America 90, 2099–100, 1993.
Dynamic Monte Carlo simulations of globular protein folding/unfolding pathways: I. Six-member, Greek Key beta-Barrel proteinsSkolnick, J. & Koliński, A.Journal of Molecular Biology 212, 787–817, 1990.
De novo predictions of the quaternary structure of leucine zippers and other coiled coilsSkolnick, J., Koliński, A. & Mohanty, D.International Journal of Quantum Chemistry 75, 165–176, 1999.
Phenomenological theory of the dynamics of polymer melts. I. Analytic treatment of self-diffusionSkolnick, J., Yaris, R. & Koliński, A.The Journal of Chemical Physics 3, 33–64, 1988.
MONSSTER: a method for folding globular proteins with a small number of distance restraintsSkolnick, J., Koliński, A. & Ortiz, A.R.Journal of Molecular Biology 265, 217–241, 1997.
A method for prediction of protein structure from sequenceSkolnick, J., Koliński, A., Brooks, III, C.L., Godzik, A. & Rey, A.Current Biology 3, 414–423, 1993.
Dynamic Monte Carlo Simulation of a melt of ring polymersSkolnick, J., Koliński, A., Sikorski, A. & Yaris, R.Polymer Preprints 30, 70–73, 1989.
Monte Carlo Simulations of Protein Folding. I. Lattice Model nad Interaction SchemeSkolnick, J.Proteins 18, 338–352, 1994.
De novo simulations of the folding of GCN4 and its mutantsSkolnick, J., Vieth, M., Koliński, A. & Brooks, III, C.L.Modeling of Biomolecular Structures and Mechanisms 8, 95–98, 1995.
Monte Carlo approaches to the protein folding problemSkolnick, J. & Koliński, A.Advances in Chemical Physics: Monte Carlo Methods in Chemical Physics 105, 203–242, 1999.
A unified approach to the prediction of protein structure and functionSkolnick, J. & Koliński, A.Computational Methods for Protein Folding 120, , 2002.
Computer simulations of globular protein folding and tertiary structureSkolnick, J. & Koliński, A.Annual Review of Physical Chemistry 40, 207–235, 1989.
Reduced protein models and their application to the protein folding problemSkolnick, J., Koliński, A. & Ortiz, A.R.Journal of Biomolecular Structure and Dynamics 16, 381–396, 1998.

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