BioShell-Threading: versatile Monte Carlo package for protein 3D threading.BMC Bioinformatics 15, 22, 2014.
CABS-flex predictions of protein flexibility compared with NMR ensemblesBioinformatics 30, 2150-2154, 2014.
Coarse-Grained Modeling of Protein DynamicsComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes, Springer Series in Bio-/Neuroinformatics, Adam Liwo, Ed. 1, 55-79, 2014.
Coarse-grained modeling of protein structure, dynamics and protein-protein interactionsTASK Quarterly 18, 219–229, 2014.
Coarse-Grained Protein Models in Structure PredictionComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes, Springer Series in Bio-/Neuroinformatics, Adam Liwo, Ed. 1, 25-53, 2014.
Connecting thermal and mechanical protein (un)folding landscapesBiophysical Journal 107(12), 2950-61, 2014.
Flexible docking of the fragment of the troponin I to the troponin CIWBBIO 2014 (2nd International Work-Conference on Bioinformatics and Biomedical Engineering) , 2014.
Key Factors Governing Fibril Formation Of Proteins: Insights From Simulations And ExperimentsTask Quarterly 18, 245–254, 2014.
Mechanical unfolding of DDFLN4 studied by the coarse-grained knowledge-based CABS modelTASK Quarterly 18, 373–378, 2014.
Mechanism of Folding and Binding of an Intrinsically Disordered Protein as Revealed by Ab Initio SimulationsJournal of Chemical Theory and Computation 10, 2224–2231, 2014.
Protocols for efficient simulations of long time protein dynamics using coarse-grained CABS modelProtein structure prediction (3rd Edition), Methods in Molecular Biology, Daisuke Kihara, Ed. 1137, 235-250, 2014.
CABS-flex: server for fast simulation of protein structure fluctuationsNucleic Acids Research 41, W427-W431, 2013.
CABS-fold: server for the de novo and consensus-based prediction of protein structureNucleic Acids Research 41, W406-W411, 2013.
Combining Coarse-Grained Protein Models with Replica-Exchange All-Atom Molecular DynamicsInternational Journal of Molecular Sciences 14, 9893–9905, 2013.
Consistent View of Protein Fluctuations from All-Atom Molecular Dynamics and Coarse-Grained Dynamics with Knowledge-Based Force-FieldJournal of Chemical Theory and Computation 9, 119 - 125, 2013.
Distributions of amino acids suggest that certain residue types more effectively determine protein secondary structureJournal of Molecular Modeling 19, 4337-48, 2013.
Hysteresis as a Marker for Complex, Overlapping Landscapes in Proteins.Journal of Physicak Chemistry Letters 4, 180-188, 2013.