Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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2014
Coarse-Grained Modeling of Protein DynamicsKmiecik, S., Wabik, J., Kolinski, M., Kouza, M. & Koliński, A.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes, Springer Series in Bio-/Neuroinformatics, Adam Liwo, Ed. 1, 55-79, 2014.
Coarse-Grained Protein Models in Structure PredictionBlaszczyk, M. et al.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes, Springer Series in Bio-/Neuroinformatics, Adam Liwo, Ed. 1, 25-53, 2014.
Flexible docking of the fragment of the troponin I to the troponin CWabik, J., Kurcinski, M. & Koliński, A.IWBBIO 2014 (2nd International Work-Conference on Bioinformatics and Biomedical Engineering) , 2014.
Pierced Lasso Bundles are a New Class of Knot MotifsHaglund, E. et al.PLoS computational biology 10(6), , 2014.
Protocols for efficient simulations of long time protein dynamics using coarse-grained CABS modelJamroz, M., Koliński, A. & Kmiecik, S.Protein structure prediction (3rd Edition), Methods in Molecular Biology, Daisuke Kihara, Ed. 1137, 235-250, 2014.
2013
Identifying knots in proteins.Millett, K.C., Rawdon, E.J., Stasiak, A. & Sulkowska, J.I.Biochemical Society Transactions 41, 533-7, 2013.
Knot localization in proteins.Rawdon, E.J., Millett, K.C., Sulkowska, J.I. & Stasiak, A.Biochemical Society Transactions 41, 538-41, 2013.
Knotting a Protein in Explicit SolventNoel, J.K., Onuchic, J.N. & Sulkowska, J.I.The Journal of Physical Chemistry Letters 4, 3570-3573, 2013.
Knotting pathways in proteins.Sulkowska, J.I. et al.Biochemical Society Transactions 41, 523-7, 2013.

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