Andrzej Kolinski Research Group

Coarse-grained protein modeling

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Publications

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1999
A method for the improvement of threading-based protein modelsKoliński, A., Rotkiewicz, P., Ilkowski, B. & Skolnick, J.Proteins 37, 592–610, 1999.
1998
Assembly of protein structure from sparse experimental data: an efficient Monte Carlo modelKoliński, A. & Skolnick, J.Proteins 32, 475–494, 1998.
Computer simulations of de novo designed helical proteinsSikorski, A., Koliński, A. & Skolnick, J.Biophysical Journal 75, 92–105, 1998.
Nativelike topology assembly of small proteins using predicted restraints in Monte Carlo folding simulationsOrtiz, A.R., Koliński, A. & Skolnick, J.Proceedings of the National Academy of Sciences of the United States of America 95, 1020–1025, 1998.
Tertiary structure prediction of the KIX domain of CBP using Monte Carlo simulations driven by restraints derived from multiple sequence alignmentsOrtiz, A.R., Koliński, A. & Skolnick, J.Proteins 30, 287–294, 1998.
1997
Improved method for prediction of protein backbone U-turn positions and major secondary structural elements between U-turnsHu, W.-P., Koliński, A. & Skolnick, J.Proteins 29, 443–460, 1997.
MONSSTER: a method for folding globular proteins with a small number of distance restraintsSkolnick, J., Koliński, A. & Ortiz, A.R.Journal of Molecular Biology 265, 217–241, 1997.
1996
Does a backwardly read protein sequence have a unique native state?Olszewski, K.A., Koliński, A. & Skolnick, J.Protein Engineering 9, 5–14, 1996.
On the origin of the cooperativity of protein folding: implications from model simulationsKoliński, A., Galazka, W. & Skolnick, J.Proteins 26, 271–287, 1996.

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