Publications
Pages
TOUCHSTONE II: a new approach to ab initio protein structure predictionBiophysical Journal 85, 1145–64, 2003.
On the remarkable mechanostability of scaffoldins and the mechanical clamp motif.Proceedings of the National Academy of Sciences of the United States of America 106, 13791-6, 2009.
TRACER. A new approach to comparative modeling that combines threading with free-space conformational samplingActa Biochimica Polonica 57, 125–33, 2010.
Conservation of complex knotting and slipknotting patterns in proteins.Proceedings of the National Academy of Sciences of the United States of America 109, E1715-23, 2012.
Genomics-aided structure prediction.Proceedings of the National Academy of Sciences of the United States of America 109, 10340-5, 2012.
Energy landscape of knotted protein folding.Proceedings of the National Academy of Sciences of the United States of America 109, 17783-8, 2012.
Selection of optimal variants of Gō-like models of proteins through studies of stretching.Biophys J 95, 3174-91, 2008.
Dodging the crisis of folding proteins with knots.Proceedings of the National Academy of Sciences of the United States of America 106, 3119-24, 2009.
From independent modules to molten globules: observations on the nature of protein folding intermediatesProceedings of the National Academy of Sciences of the United States of America 90, 2099–100, 1993.
Monte Carlo studies on equilibrium globular protein folding. II. Beta-barrel globular protein modelsBiopolymers 28, 1059–95, 1989.
Mechanical strength of 17,134 model proteins and cysteine slipknots.PLoS Comput Biol 5, e1000547, 2009.
Why do proteins divide into domains? Insights from lattice model simulationsBiomacromolecules 8, 3519–24, 2007.
Inferring ideal amino acid interaction forms from statistical protein contact potentialsProteins 59, 49–57, 2005.
A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native stateBiophysical Journal 84, 1518–26, 2003.
A minimal proteinlike lattice model: an alpha-helix motifThe Journal of Chemical Physics 122, 214915, 2005.