Publications
Pages
Monte Carlo studies on equilibrium globular protein folding. I. Homopolymeric lattice models of beta-barrel proteinsBiopolymers 26, 937–62, 1987.
Monte Carlo studies on equilibrium globular protein folding. II. Beta-barrel globular protein modelsBiopolymers 28, 1059–95, 1989.
Static and dynamic properties of a new lattice model of polypeptide chainsThe Journal of Chemical Physics 94, 3978, 1991.
Discretized model of proteins. I. Monte Carlo study of cooperativity in homopolypeptidesJournal of Chemical Physics 97, 9412–9426, 1992.
From independent modules to molten globules: observations on the nature of protein folding intermediatesProceedings of the National Academy of Sciences of the United States of America 90, 2099–100, 1993.
Are proteins ideal mixtures of amino acids? Analysis of energy parameter setsProtein Science: a Publication of the Protein Society 4, 2107–2117, 1995.
A method for the prediction of surface "U"-turns and transglobular connections in small proteinsProteins 27, 290–308, 1997.
Ab initio folding of proteins using restraints derived from evolutionary informationProteins Suppl. 3, 177–185, 1999.
Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniquesBiophysical Journal 77, 2942–52, 1999.
TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraintsProceedings of the National Academy of Sciences of the United States of America 98, 10125–30, 2001.
Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genomeProceedings of the National Academy of Sciences of the United States of America 99, 5993–5998, 2002.
A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native stateBiophysical Journal 84, 1518–26, 2003.
Protein fragment reconstruction using various modeling techniquesJournal of Computer-Aided Molecular Design 17, 725–38, 2003.
A simple lattice model that exhibits a protein-like cooperative all-or-none folding transitionBiopolymers 69, 399–405, 2003.
TOUCHSTONE II: a new approach to ab initio protein structure predictionBiophysical Journal 85, 1145–64, 2003.
Unfolding of globular proteins: monte carlo dynamics of a realistic reduced modelBiophysical Journal 85, 3271–3278, 2003.
Protein modeling and structure prediction with a reduced representationActa Biochimica Polonica 51, 349–71, 2004.