Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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2013
Identifying knots in proteins.Millett, K.C., Rawdon, E.J., Stasiak, A. & Sulkowska, J.I.Biochemical Society Transactions 41, 533-7, 2013.
Knot localization in proteins.Rawdon, E.J., Millett, K.C., Sulkowska, J.I. & Stasiak, A.Biochemical Society Transactions 41, 538-41, 2013.
Knotting a Protein in Explicit SolventNoel, J.K., Onuchic, J.N. & Sulkowska, J.I.The Journal of Physical Chemistry Letters 4, 3570-3573, 2013.
Knotting pathways in proteins.Sulkowska, J.I. et al.Biochemical Society Transactions 41, 523-7, 2013.
2012
Coarse-grained Protein Modeling: Dynamics, Folding Pathways and Mechanical UnfoldingKoliński, A., Blaszczyk, M. & Kmiecik, S.From Computational Biophysics to Systems Biology (CBSB11) Proceedings 8, 83–90, 2012.
Conservation of complex knotting and slipknotting patterns in proteins.Sulkowska, J.I., Rawdon, E.J., Millett, K.C., Onuchic, J.N. & Stasiak, A.Proceedings of the National Academy of Sciences of the United States of America 109, E1715-23, 2012.
Energy landscape of knotted protein folding.Sulkowska, J.I., Noel, J.K. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 109, 17783-8, 2012.
Folding Simulations of the A and B Domains of Protein GKouza, M. & Hansmann, U.H.E.The Journal of Physical Chemistry B 116, 6645-6653, 2012.
Genomics-aided structure prediction.Sulkowska, J.I., Morcos, F., Weigt, M., Hwa, T. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 109, 10340-5, 2012.
Modeling Protein Structures and their Complexes with Sparse Experimental DataGront, D., Blaszczyk, M., Wabik, J. & Koliński, A.From Computational Biophysics to Systems Biology (CBSB11) Proceedings 8, 49–52, 2012.
Modelowanie Molekularne Białek Błonowych (Molecular Modeling of Membrane Proteins)Dawid, A., Kolinski, M., Koliński, A. & Kmiecik, S.Na pograniczu chemii i biologii (At the Treshold of Chemistry and Biology) vol. XXVIII, H. Koroniak, J. Barciszewski eds, Wydawnictwo Naukowe UAM, Poznań 223-238, 2012.
Multiscale Approach to Thermodynamics and Dynamics of a beta-Hairpin FoldingWabik, J., Gront, D., Kmiecik, S. & Koliński, A.From Computational Biophysics to Systems Biology (CBSB11) Proceedings 8, 213–216, 2012.

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