Publications
BioShell-Threading: versatile Monte Carlo package for protein 3D threading.BMC Bioinformatics 15, 22, 2014.
Elastic network normal modes provide a basis for protein structure refinementThe Journal of Chemical Physics 136, 195101, 2012.
How noise in force fields can affect the structural refinement of protein models?Proteins 80, 335–341, 2012.
Optimization of profile-to-profile alignment parameters for one-dimensional threadingJournal of Computational Biology 19, 879–86, 2012.
Note: A simple picture of subdiffusive polymer motion from stochastic simulationsThe Journal of Chemical Physics 134, 056101, 2011.
Coarse-grained Monte Carlo simulations of mucus: structure, dynamics, and thermodynamicsBiophysical Journal 99, 3507–16, 2010.
Designing an Automatic Pipeline for Protein Structure Prediction Designing an Automatic Pipeline for Protein Structure PredictionFrom Computational Biophysics to Systems Biology (CBSB08) 40, 105–108, 2008.