Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions



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Explicit-Solvent All-Atom Molecular Dynamics of Peptide AggregationKouza, M., Koliński, A., Buhimschi, I. & Kloczkowski, A.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: From Bioinformatics to Molecular Quantum Mechanics 541–558, 2019.
Protein secondary structure prediction using knowledge-based potentialsSaraswathi, S., Jernigan, R.L., Kloczkowski, A. & Koliński, A.International Conference on Fuzzy Computation and 2nd International Conference on Neural Computation 370-375, 2010.
Distance matrix-based approach to protein structure predictionKloczkowski, A. et al.Journal of Structural and Functional Genomics 10, 67–81, 2009.
Ideal amino acid exchange forms for approximating substitution matricesPokarowski, P. et al.Proteins: Structure, Function, Bioinformatics 69, 379–393, 2007.