Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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2010
MSITE: a new computational tool for comparison of homological proteins in holo formSicinska, W. & Kurcinski, M.The Journal of Steroid Biochemistry and Molecular Biology 121, 34-42, 2010.
Protein secondary structure prediction using knowledge-based potentialsSaraswathi, S., Jernigan, R.L., Kloczkowski, A. & Koliński, A.International Conference on Fuzzy Computation and 2nd International Conference on Neural Computation 370-375, 2010.
Slipknotting upon native-like loop formation in a trefoil knot protein.Noel, J.K., Sulkowska, J.I. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 107, 15403-8, 2010.
A Stevedore's protein knot.Bölinger, D. et al.PLoS Comput Biol 6, e1000731, 2010.
Untying knots in proteins.Sulkowska, J.I., Sułkowski, P., Szymczak, P. & Cieplak, M.Journal of the American Chemical Society 132, 13954-6, 2010.
2009
Distance matrix-based approach to protein structure predictionKloczkowski, A. et al.Journal of Structural and Functional Genomics 10, 67–81, 2009.
Dodging the crisis of folding proteins with knots.Sulkowska, J.I., Sułkowski, P. & Onuchic, J.Proceedings of the National Academy of Sciences of the United States of America 106, 3119-24, 2009.
On the remarkable mechanostability of scaffoldins and the mechanical clamp motif.Valbuena, A. et al.Proceedings of the National Academy of Sciences of the United States of America 106, 13791-6, 2009.

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