Andrzej Kolinski Research Group

Coarse-grained protein modeling

Read our new review on coarse-grained modeling

Modeling Software & Servers

Try the CABSdock for protein-peptide docking

Biomolecules — dynamics & interactions

Read relevant publications
0
-1
-2
-3
Previous Pause Next

Publications

Export 66 results:
Author Title Type [ Year(Asc)]
Filters: Keyword is Models  [Clear All Filters]

Pages

1999
Ab initio folding of proteins using restraints derived from evolutionary informationOrtiz, A.R., Koliński, A., Rotkiewicz, P., Ilkowski, B. & Skolnick, J.Proteins Suppl. 3, 177–185, 1999.
Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniquesKoliński, A., Ilkowski, B. & Skolnick, J.Biophysical Journal 77, 2942–52, 1999.
A method for the improvement of threading-based protein modelsKoliński, A., Rotkiewicz, P., Ilkowski, B. & Skolnick, J.Proteins 37, 592–610, 1999.
1998
Assembly of protein structure from sparse experimental data: an efficient Monte Carlo modelKoliński, A. & Skolnick, J.Proteins 32, 475–494, 1998.
Computer simulations of de novo designed helical proteinsSikorski, A., Koliński, A. & Skolnick, J.Biophysical Journal 75, 92–105, 1998.
Fold assembly of small proteins using monte carlo simulations driven by restraints derived from multiple sequence alignmentsOrtiz, A.R., Koliński, A. & Skolnick, J.Journal of Molecular Biology 277, 419–448, 1998.
Nativelike topology assembly of small proteins using predicted restraints in Monte Carlo folding simulationsOrtiz, A.R., Koliński, A. & Skolnick, J.Proceedings of the National Academy of Sciences of the United States of America 95, 1020–1025, 1998.
Tertiary structure prediction of the KIX domain of CBP using Monte Carlo simulations driven by restraints derived from multiple sequence alignmentsOrtiz, A.R., Koliński, A. & Skolnick, J.Proteins 30, 287–294, 1998.
1997
Improved method for prediction of protein backbone U-turn positions and major secondary structural elements between U-turnsHu, W.-P., Koliński, A. & Skolnick, J.Proteins 29, 443–460, 1997.
MONSSTER: a method for folding globular proteins with a small number of distance restraintsSkolnick, J., Koliński, A. & Ortiz, A.R.Journal of Molecular Biology 265, 217–241, 1997.
1996
Does a backwardly read protein sequence have a unique native state?Olszewski, K.A., Koliński, A. & Skolnick, J.Protein Engineering 9, 5–14, 1996.
On the origin of the cooperativity of protein folding: implications from model simulationsKoliński, A., Galazka, W. & Skolnick, J.Proteins 26, 271–287, 1996.
1995
Are proteins ideal mixtures of amino acids? Analysis of energy parameter setsGodzik, A., Koliński, A. & Skolnick, J.Protein Science: a Publication of the Protein Society 4, 2107–2117, 1995.
1989
Monte Carlo studies on equilibrium globular protein folding. II. Beta-barrel globular protein modelsSkolnick, J., Koliński, A. & Yaris, R.Biopolymers 28, 1059–95, 1989.
1987
Monte Carlo studies on equilibrium globular protein folding. I. Homopolymeric lattice models of beta-barrel proteinsKoliński, A., Skolnick, J. & Yaris, R.Biopolymers 26, 937–62, 1987.
1986
Monte Carlo simulations on an equilibrium globular protein folding modelKoliński, A., Skolnick, J. & Yaris, R.Proceedings of the National Academy of Sciences of the United States of America 83, 7267–71, 1986.

Pages