Publications
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Lattice models of protein folding. Dynamics and thermodynamicsLattice models of protein folding. Dynamics and thermodynamics, Austin, TX, Chapman & Hall. (Chapman & Hall.: Austin, TX, 1996).
Ab initio modelingStructural Genomics and High Throughput Structural Biology 137-162, 2006.
Application of reduced models to protein structure predictionTheoretical and Computational Chemistry: Computational Molecular Biology 8, 397–440, 1999.
Contact mapEncyclopedia of Molecular Biology 567–571, 1999.
Dynamics of dense polymer systems: Computer simulations and analytic theoriesAdvances in Chemical Physics 77, 223–278, 1990.
Monte Carlo approaches to the protein folding problemAdvances in Chemical Physics: Monte Carlo Methods in Chemical Physics 105, 203–242, 1999.
Monte Carlo lattice dynamics and the prediction of protein foldsComputer Simulations of Biomolecular Systems. Theoretical and Experimental Applications pp, 395–429, 1997.
A unified approach to the prediction of protein structure and functionComputational Methods for Protein Folding 120, , 2002.
An algorithm for prediction of structural elements in small proteinsProceeding of I-st Pacific Symposium on Biocomputing 446–460, 1996.
Application of a high coordination lattice model in protein structure predictionProceedings of HRLC Workshop pp, 100–130, 1998.
Combined multiple sequence reduced protein model approach to predict the tertiary structure of small proteinsProceedings of the Pacific Symposium on Biocomputing ’98 pp, 377–388, 1998.
Method for low resolution prediction of small protein tertiary structureProceeding of II-nd Pacific Symposium on Biocomputing 316–327, 1997.
Monte Carlo dynamics of diamond-lattice multichain systemsAIP Conference Proceedings 137, 241–245, 1986.
Prediction of the quaternary structure of coiled coils: GCN4 leucine zipper and its mutants.Proceeding of I-st Pacific Symposium on Biocomputing 653–662, 1996.
The role of computational biology in the genomics revolutionImpact of Advances in Computing and Communications Technologies on Chemical Sciences and Technology, Proceedings of the National Research Council pp, 44–61, 1999.
Ab initio folding of proteins using restraints derived from evolutionary informationProteins Suppl. 3, 177–185, 1999.
Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genomeProceedings of the National Academy of Sciences of the United States of America 99, 5993–5998, 2002.
Algorithm for rapid reconstruction of protein backbone from alpha carbon coordinatesJournal of Computational Chemistry 18, 80–85, 1997.
Are proteins ideal mixtures of amino acids? Analysis of energy parameter setsProtein Science: a Publication of the Protein Society 4, 2107–2117, 1995.
Assembly of protein structure from sparse experimental data: an efficient Monte Carlo modelProteins 32, 475–494, 1998.
The collapse transition of semiflexible polymers. A Monte Carlo simulation of a model systemThe Journal of Chemical Physics 85, 3585–3597, 1986.
Combining MONSSTER and LES/PME to Predict Protein Structure from Amino Acid Sequence: Application to the Small Protein CMTI-1Journal of the American Chemical Society 122, 8392–8402, 2000.
Comment on "Local knot model of entangled polymer chains"The Journal of Physical Chemistry 97, 3450, 1993.