Publications
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Monte Carlo approaches to the protein folding problemAdvances in Chemical Physics: Monte Carlo Methods in Chemical Physics 105, 203–242, 1999.
From independent modules to molten globules: observations on the nature of protein folding intermediatesProceedings of the National Academy of Sciences of the United States of America 90, 2099–100, 1993.
Monte Carlo lattice dynamics and the prediction of protein foldsComputer Simulations of Biomolecular Systems. Theoretical and Experimental Applications pp, 395–429, 1997.
Monte Carlo simulations of the folding of beta-barrel globular proteinsProceedings of the National Academy of Sciences of the United States of America 85, 5057–5061, 1988.
The role of computational biology in the genomics revolutionImpact of Advances in Computing and Communications Technologies on Chemical Sciences and Technology, Proceedings of the National Research Council pp, 44–61, 1999.
Dynamic Monte Carlo Simulations of a new lattice model of globular protein folding, structure, and dynamicsJournal of Molecular Biology 221, 499–531, 1991.
De novo predictions of the quaternary structure of leucine zippers and other coiled coilsInternational Journal of Quantum Chemistry 75, 165–176, 1999.
Dynamic Monte Carlo study of the folding of a six-stranded Greek key globular proteinProceedings of the National Academy of Sciences of the United States of America 86, 1229–1233, 1989.
Monte Carlo Simulations of Protein Folding. I. Lattice Model nad Interaction SchemeProteins 18, 338–352, 1994.
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?Protein Science 6, 676–688, 1997.
Computer simulations of globular protein folding and tertiary structureAnnual Review of Physical Chemistry 40, 207–235, 1989.
Phenomenological theory of the dynamics of polymer melts. I. Analytic treatment of self-diffusionThe Journal of Chemical Physics 3, 33–64, 1988.
A unified approach to the prediction of protein structure and functionAdvances in Chemical Physics 120, 131–192, 2002.
Derivation of protein-specific pair potentials based on weak sequence fragment similarityProteins: Structure, Function, Bioinformatics 38, 3–16, 2000.
Dynamic Monte Carlo Globular Protein Folding and StructureChemical Design Automation News 5, 1–20, 1990.
De novo simulations of the folding of GCN4 and its mutantsModeling of Biomolecular Structures and Mechanisms 8, 95–98, 1995.
Monte Carlo studies of the long-time dynamics of dense polymer systems. The failure of the reptation modelAccounts of Chemical Research 20, 350–356, 1987.
Dynamics of dense polymer systems: Computer simulations and analytic theoriesAdvances in Chemical Physics 77, 223–278, 1990.
Computational studies of protein foldingComputing in Science & Engineering September/October, 22–31, 2001.
Reduced protein models and their application to the protein folding problemJournal of Biomolecular Structure and Dynamics 16, 381–396, 1998.
MONSSTER: a method for folding globular proteins with a small number of distance restraintsJournal of Molecular Biology 265, 217–241, 1997.