Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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2008
AAindex: amino acid index database, progress report 2008Kawashima, S. et al.Nucleic Acids Research 36, D202–5, 2008.
2002
Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genomeKihara, D., Zhang, Y., Lu, H., Koliński, A. & Skolnick, J.Proceedings of the National Academy of Sciences of the United States of America 99, 5993–5998, 2002.
1995
Are proteins ideal mixtures of amino acids? Analysis of energy parameter setsGodzik, A., Koliński, A. & Skolnick, J.Protein Science: a Publication of the Protein Society 4, 2107–2117, 1995.
2006
2007
Characterization of protein-folding pathways by reduced-space modelingKmiecik, S. & Koliński, A.Proceedings of the National Academy of Sciences of the United States of America 104, 12330–5, 2007.
Comparative modeling without implicit sequence alignmentsKoliński, A. & Gront, D.Bioinformatics (Oxford, England) 23, 2522–7, 2007.
2012
Conservation of complex knotting and slipknotting patterns in proteins.Sulkowska, J.I., Rawdon, E.J., Millett, K.C., Onuchic, J.N. & Stasiak, A.Proceedings of the National Academy of Sciences of the United States of America 109, E1715-23, 2012.
2009
2009
Distance matrix-based approach to protein structure predictionKloczkowski, A. et al.Journal of Structural and Functional Genomics 10, 67–81, 2009.
Dodging the crisis of folding proteins with knots.Sulkowska, J.I., Sułkowski, P. & Onuchic, J.Proceedings of the National Academy of Sciences of the United States of America 106, 3119-24, 2009.
2012
Energy landscape of knotted protein folding.Sulkowska, J.I., Noel, J.K. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 109, 17783-8, 2012.
2008
1993
From independent modules to molten globules: observations on the nature of protein folding intermediatesSkolnick, J., Koliński, A. & Godzik, A.Proceedings of the National Academy of Sciences of the United States of America 90, 2099–100, 1993.
2012
Genomics-aided structure prediction.Sulkowska, J.I., Morcos, F., Weigt, M., Hwa, T. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 109, 10340-5, 2012.

Pages