Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions



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Wieloskalowe modelowanie białek (Multiscale protein modeling)Gront, D. et al.Na pograniczu chemii i biologii (At the treshold of chemistry and biology) 17, 239-256, 2008.
High throughput method for protein structure predictionGront, D. et al.NIC Workshop 2006: From Computational Biophysics to System Biology 34, 79-82, 2006.
Clustering as a supporting tool for structural drug designGront, D., Kurcinski, M. & Koliński, A.Acta Poloniae Pharmaceutica. Drug Research 63, 436-8, 2006.
Utility library for structural bioinformaticsGront, D. & Koliński, A.Bioinformatics (Oxford, England) 24, 584–5, 2008.
Modeling Protein Structures and their Complexes with Sparse Experimental DataGront, D., Blaszczyk, M., Wabik, J. & Koliński, A.From Computational Biophysics to Systems Biology (CBSB11) Proceedings 8, 49–52, 2012.
Exploring protein energy landscapes with hierarchical clusteringGront, D., Hansmann, U.H.E. & Koliński, A.International Journal of Quantum Chemistry 105, 826–830, 2005.
Protein structure prediction by tempering spatial constraintsGront, D., Koliński, A. & Hansmann, U.H.E.Journal of Computer-Aided Molecular Design 19, 603–8, 2005.
Optimization of protein modelsGront, D., Kmiecik, S., Blaszczyk, M., Ekonomiuk, D. & Koliński, A.Wiley Interdisciplinary Reviews: Computational Molecular Science 2, 479–493, 2012.
Simulations of the Folding Pathway of TIM-type a/ß Barrel ProteinsGodzik, A., Skolnick, J. & Koliński, A.Proceedings of the National Academy of Sciences of the United States of America 89, 2629–2633, 1992.
Are proteins ideal mixtures of amino acids? Analysis of energy parameter setsGodzik, A., Koliński, A. & Skolnick, J.Protein Science: a Publication of the Protein Society 4, 2107–2117, 1995.