Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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Energy landscape of knotted protein folding.Sulkowska, J.I., Noel, J.K. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 109, 17783-8, 2012.
Untying knots in proteins.Sulkowska, J.I., Sułkowski, P., Szymczak, P. & Cieplak, M.Journal of the American Chemical Society 132, 13954-6, 2010.
Knotting pathways in proteins.Sulkowska, J.I. et al.Biochemical Society Transactions 41, 523-7, 2013.
Stabilizing effect of knots on proteins.Sulkowska, J.I., Sulkowski, P., Szymczak, P. & Cieplak, M.Proceedings of the National Academy of Sciences of the United States of America 105, 19714-9, 2008.
Dodging the crisis of folding proteins with knots.Sulkowska, J.I., Sułkowski, P. & Onuchic, J.Proceedings of the National Academy of Sciences of the United States of America 106, 3119-24, 2009.
Conservation of complex knotting and slipknotting patterns in proteins.Sulkowska, J.I., Rawdon, E.J., Millett, K.C., Onuchic, J.N. & Stasiak, A.Proceedings of the National Academy of Sciences of the United States of America 109, E1715-23, 2012.
Genomics-aided structure prediction.Sulkowska, J.I., Morcos, F., Weigt, M., Hwa, T. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 109, 10340-5, 2012.
Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization stepSteczkiewicz, K. et al.Proceedings of the National Academy of Sciences of the United States of America 108, 9443–8, 2011.
Monte Carlo lattice dynamics and the prediction of protein foldsSkolnick, J., Koliński, A., van Gunsteren, W.F., Weiner, P.K. & Wilkinson, A.J.Computer Simulations of Biomolecular Systems. Theoretical and Experimental Applications pp, 395–429, 1997.
Phenomenological Theory of Polymer Melt DynamicsSkolnick, J., Yaris, R. & Koliński, A.International Journal of Modern Physics B 3, 33-64, 1989.
The role of computational biology in the genomics revolutionSkolnick, J., Fetrow, J.S., Ortiz, A.R. & Koliński, A.Impact of Advances in Computing and Communications Technologies on Chemical Sciences and Technology, Proceedings of the National Research Council pp, 44–61, 1999.
From independent modules to molten globules: observations on the nature of protein folding intermediatesSkolnick, J., Koliński, A. & Godzik, A.Proceedings of the National Academy of Sciences of the United States of America 90, 2099–100, 1993.

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