Andrzej Kolinski Research Group

Coarse-grained protein modeling

Read our new review on coarse-grained modeling

Modeling Software & Servers

Try the CABSdock for protein-peptide docking

Biomolecules — dynamics & interactions

Read relevant publications
0
-1
-2
-3
Previous Pause Next

Publications

Export 78 results:
[ Author(Asc)] Title Type Year
Filters: First Letter Of Last Name is S  [Clear All Filters]
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 

Pages

S
Design and synthesis of novel 1H-tetrazol-5-amine based potent antimicrobial agents: DNA topoisomerase IV and gyrase affinity evaluation supported by molecular docking studiesSzulczyk, D. et al.European Journal of Medicinal Chemistry 156, 631 - 640, 2018.
Connecting thermal and mechanical protein (un)folding landscapesSun, L., Noel, J.K., Sulkowska, J.I., Levine, H. & Onuchic, J.N.Biophysical Journal 107(12), 2950-61, 2014.
Jamming proteins with slipknots and their free energy landscape.Sulkowska, J.I., Sułkowski, P. & Onuchic, J.N.Phys Rev Lett 103, 268103, 2009.
Energy landscape of knotted protein folding.Sulkowska, J.I., Noel, J.K. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 109, 17783-8, 2012.
Selection of optimal variants of Gō-like models of proteins through studies of stretching.Sulkowska, J.I. & Cieplak, M.Biophys J 95, 3174-91, 2008.
Untying knots in proteins.Sulkowska, J.I., Sułkowski, P., Szymczak, P. & Cieplak, M.Journal of the American Chemical Society 132, 13954-6, 2010.
Mechanical stretching of proteins—a theoretical survey of the Protein Data BankSulkowska, J.I. & Cieplak, M.Journal of Physics: Condensed Matter 19, , 2007.
Knotting pathways in proteins.Sulkowska, J.I. et al.Biochemical Society Transactions 41, 523-7, 2013.
Stabilizing effect of knots on proteins.Sulkowska, J.I., Sulkowski, P., Szymczak, P. & Cieplak, M.Proceedings of the National Academy of Sciences of the United States of America 105, 19714-9, 2008.
Stretching to understand proteins - a survey of the protein data bank.Sulkowska, J.I. & Cieplak, M.Biophys J 94, 6-13, 2008.
Dodging the crisis of folding proteins with knots.Sulkowska, J.I., Sułkowski, P. & Onuchic, J.Proceedings of the National Academy of Sciences of the United States of America 106, 3119-24, 2009.
Conservation of complex knotting and slipknotting patterns in proteins.Sulkowska, J.I., Rawdon, E.J., Millett, K.C., Onuchic, J.N. & Stasiak, A.Proceedings of the National Academy of Sciences of the United States of America 109, E1715-23, 2012.
Predicting the order in which contacts are broken during single molecule protein stretching experiments.Sulkowska, J.I., Kloczkowski, A., Sen, T.Z., Cieplak, M. & Jernigan, R.L.Proteins 71, 45-60, 2008.
Genomics-aided structure prediction.Sulkowska, J.I., Morcos, F., Weigt, M., Hwa, T. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 109, 10340-5, 2012.
Tightening of knots in proteins.Sulkowska, J.I., Sułkowski, P., Szymczak, P. & Cieplak, M.Phys Rev Lett 100, 058106, 2008.
Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization stepSteczkiewicz, K. et al.Proceedings of the National Academy of Sciences of the United States of America 108, 9443–8, 2011.
Monte Carlo lattice dynamics and the prediction of protein foldsSkolnick, J., Koliński, A., van Gunsteren, W.F., Weiner, P.K. & Wilkinson, A.J.Computer Simulations of Biomolecular Systems. Theoretical and Experimental Applications pp, 395–429, 1997.
De Novo Prediction of Protein Tertiary StructureSkolnick, J. & Koliński, A.Polymer Preprints 35, 82–83, 1994.
Phenomenological Theory of Polymer Melt DynamicsSkolnick, J., Yaris, R. & Koliński, A.International Journal of Modern Physics B 3, 33-64, 1989.
Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinementSkolnick, J. et al.Proteins 45, 149–156, 2001.
A unified approach to the prediction of protein structure and functionSkolnick, J. & Koliński, A.Advances in Chemical Physics 120, 131–192, 2002.
Monte Carlo studies on equilibrium globular protein folding. II. Beta-barrel globular protein modelsSkolnick, J., Koliński, A. & Yaris, R.Biopolymers 28, 1059–95, 1989.
The role of computational biology in the genomics revolutionSkolnick, J., Fetrow, J.S., Ortiz, A.R. & Koliński, A.Impact of Advances in Computing and Communications Technologies on Chemical Sciences and Technology, Proceedings of the National Research Council pp, 44–61, 1999.
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?Skolnick, J., Jaroszewski, L., Koliński, A. & Godzik, A.Protein Science 6, 676–688, 1997.
Monte Carlo studies of the long-time dynamics of dense polymer systems. The failure of the reptation modelSkolnick, J., Koliński, A. & Yaris, R.Accounts of Chemical Research 20, 350–356, 1987.

Pages