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Distributions of amino acids suggest that certain residue types more effectively determine protein secondary structureSaraswathi, S., Fernández-Martínez, J.L., Koliński, A., Jernigan, R.L. & Kloczkowski, A.Journal of Molecular Modeling 19, 4337-48, 2013.
Fast learning optimized prediction methodology (FLOPRED) for protein secondary structure predictionSaraswathi, S., Martinez, J.Luis Ferna, Koliński, A., Jernigan, R.L. & Kloczkowski, A.Journal of Molecular Modeling 18, 4275–89, 2012.
Protein secondary structure prediction using knowledge-based potentialsSaraswathi, S., Jernigan, R.L., Kloczkowski, A. & Koliński, A.International Conference on Fuzzy Computation and 2nd International Conference on Neural Computation 370-375, 2010.
Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecASen, T.Z. et al.Biophysical journal 94, 2482–91, 2008.
DFT Calculation of Nitrogen Chemical Shifts in the Active Site of Vitamin D ReceptorSicinska, W.Polish Journal of Chemistry Vol. 80, no 7, 1171–1183, 2006.
A detailed 1H and 13C NMR study of a repeating disaccharide of hyaluronan: the effects of temperature and counterion typeSicinska, W., Adams, B. & Lerner, L.Carbohydrate Research 242, 29 - 51, 1993.
Computational analysis of the active sites in binary and ternary complexes of the vitamin D receptorSicinska, W. & Rotkiewicz, P.The Journal of Steroid Biochemistry and Molecular Biology 103, 305-9, 2007.
A 15N NMR study of some sulphilimines and sulphone iminesSicinska, W., Stefaniak, L., Witanowski, M. & Webb, G.A.Bulletin of the Polish Academy of Sciences 32, 201-205, 1984.
A detailed 1H and 13C NMR study of a repeating disaccharide of hyaluronan: the effect of sodium and calcium ionsSicinska, W. & Lerner, L.E.Carbohydrate Research 286, 151-159, 1996.
A detailed 1H and 13C NMR study of a repeating disaccharide of hyaluronan: the effect of sodium and calcium ionsSicinska, W. & Lerner, L.E.Carbohydrate Research 286, 151 - 159, 1996.
Structural changes of vitamin D receptor induced by 20-epi-1alpha,25-(OH)2D3: an insight from a computational analysisSicinska, W. & Rotkiewicz, P.The Journal of Steroid Biochemistry and Molecular Biology 113, 253-8, 2009.
14N NMR studies on some N-sulphinylaminesSicinska, W., Stefaniak, L., Witanowski, M. & Webb, G.A.Organic Magnetic Resonance 15, 241–243, 1981.
Model of three-dimensional structure of VDR bound with Vitamin D3 analogs substituted at carbon-2Sicinska, W., Rotkiewicz, P. & DeLuca, H.F.The Journal of Steroid Biochemistry and Molecular Biology 89-90, 107-10, 2004.
MSITE: a new computational tool for comparison of homological proteins in holo formSicinska, W. & Kurcinski, M.The Journal of Steroid Biochemistry and Molecular Biology 121, 34-42, 2010.
Conformation studies of some sulphurdiimides by spectroscopic techniquesSicinska, W., Stefaniak, L., Witanowski, M. & Webb, G.A.Journal of Molecular Structure 158, 57 - 68, 1987.
NMR assignments of tryptophan residue in apo and holo LBD-rVDRSicinska, W., Westler, W.M. & DeLuca, H.F.Proteins 61, 461-7, 2005.
Mutation goals in the vitamin D receptor predicted by computational methods.Sicinska, W., Gront, D. & Sicinski, K.The Journal of Steroid Biochemistry and Molecular Biology 183, 210-220, 2018.
Conformational analysis of some thionitritesSicinska, W., Stefaniak, L., Witanowski, M. & Webb, G.A.Journal of Molecular Structure 160, 179 - 181, 1987.
2-Ethyl and 2-ethylidene analogues of 1alpha,25-dihydroxy-19-norvitamin D(3): synthesis, conformational analysis, biological activities, and docking to the modeled rVDR ligand binding domain.Sicinski, R.R. et al.Journal of Medicinal Chemistry 45, 3366-80, 2002.
Mechanical strength of 17,134 model proteins and cysteine slipknots.Sikora, M., Sulkowska, J.I. & Cieplak, M.PLoS Comput Biol 5, e1000547, 2009.
BSDB: the biomolecule stretching database.Sikora, M., Sulkowska, J.I., Witkowski, B.S. & Cieplak, M.Nucleic Acids Research 39, D443-50, 2011.
Monte Carlo simulation of designed helical proteinsSikorski, A., Koliński, A. & Skolnick, J.Acta Poloniae Pharmaceutica – Drug Research 57 Suppl, 119-21, 2000.
Dynamics of star branched polymers in a matrix of linear chains—a Monte Carlo studySikorski, A., Koliński, A. & Skolnick, J.Macromolecular Theory and Simulations 3, 715–729, 1994.
Computer simulations of the properties of the alpha2, alpha2C, and alpha2D de novo designed helical proteinsSikorski, A., Koliński, A. & Skolnick, J.Proteins 38, 17–28, 2000.
Computer simulations of de novo designed helical proteinsSikorski, A., Koliński, A. & Skolnick, J.Biophysical Journal 75, 92–105, 1998.

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