Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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2008
AAindex: amino acid index database, progress report 2008Kawashima, S. et al.Nucleic Acids Research 36, D202–5, 2008.
2001
TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraintsKihara, D., Lu, H., Koliński, A. & Skolnick, J.Proceedings of the National Academy of Sciences of the United States of America 98, 10125–30, 2001.
2002
Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genomeKihara, D., Zhang, Y., Lu, H., Koliński, A. & Skolnick, J.Proceedings of the National Academy of Sciences of the United States of America 99, 5993–5998, 2002.
2009
Distance matrix-based approach to protein structure predictionKloczkowski, A. et al.Journal of Structural and Functional Genomics 10, 67–81, 2009.
2011
Multiscale approach to protein folding dynamicsKmiecik, S., Jamroz, M., Koliński, A. & Koliński, A.Multiscale Approaches to Protein Modeling 281-294, 2011.
2007
Characterization of protein-folding pathways by reduced-space modelingKmiecik, S. & Koliński, A.Proceedings of the National Academy of Sciences of the United States of America 104, 12330–5, 2007.
2016
Coarse-Grained Protein Models and Their ApplicationsKmiecik, S. et al.Chemical Reviews 116, 7898–7936, 2016.
2014
Coarse-Grained Modeling of Protein DynamicsKmiecik, S., Wabik, J., Kolinski, M., Kouza, M. & Koliński, A.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes, Springer Series in Bio-/Neuroinformatics, Adam Liwo, Ed. 1, 55-79, 2014.
2019
Protein Dynamics Simulations Using Coarse-Grained ModelsKmiecik, S., Wabik, J., Kolinski, M., Kouza, M. & Koliński, A.Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: From Bioinformatics to Molecular Quantum Mechanics 61–87, 2019.
2008
Uncharacterized DUF1574 leptospira proteins are SGNH hydrolasesKnizewski, L. et al.Cell Cycle (Georgetown, Tex.) 7, 542–4, 2008.

Pages