Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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Author [ Title(Desc)] Type Year
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2006
Ab initio modelingSkolnick, J. et al.Structural Genomics and High Throughput Structural Biology 137-162, 2006.
2012
Energy landscape of knotted protein folding.Sulkowska, J.I., Noel, J.K. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 109, 17783-8, 2012.
2007
Ideal amino acid exchange forms for approximating substitution matricesPokarowski, P. et al.Proteins: Structure, Function, Bioinformatics 69, 379–393, 2007.
2015
KnotProt: a database of proteins with knots and slipknotsJamroz, M. et al.Nucleic Acids Research 43, D306-D314, 2015.
2013
Knotting a Protein in Explicit SolventNoel, J.K., Onuchic, J.N. & Sulkowska, J.I.The Journal of Physical Chemistry Letters 4, 3570-3573, 2013.
Knotting pathways in proteins.Sulkowska, J.I. et al.Biochemical Society Transactions 41, 523-7, 2013.
2014
Pierced Lasso Bundles are a New Class of Knot MotifsHaglund, E. et al.PLoS computational biology 10(6), , 2014.
2000
Three-dimensional modeling of and ligand docking to vitamin D receptor ligand binding domainYamamoto, K. et al.Proceedings of the National Academy of Sciences 97, 1467-1472, 2000.