Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions



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AAindex: amino acid index database, progress report 2008Kawashima, S. et al.Nucleic Acids Research 36, D202–5, 2008.
Ab initio modelingSkolnick, J. et al.Structural Genomics and High Throughput Structural Biology 137-162, 2006.
Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genomeKihara, D., Zhang, Y., Lu, H., Koliński, A. & Skolnick, J.Proceedings of the National Academy of Sciences of the United States of America 99, 5993–5998, 2002.
An algorithm for prediction of structural elements in small proteinsKoliński, A., Skolnick, J. & Godzik, A.Proceeding of I-st Pacific Symposium on Biocomputing 446–460, 1996.
Application of reduced models to protein structure predictionSkolnick, J., Koliński, A. & Ortiz, A.R.Theoretical and Computational Chemistry: Computational Molecular Biology 8, 397–440, 1999.
Are proteins ideal mixtures of amino acids? Analysis of energy parameter setsGodzik, A., Koliński, A. & Skolnick, J.Protein Science: a Publication of the Protein Society 4, 2107–2117, 1995.